miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29799 5' -59 NC_006273.1 + 1575 0.66 0.877559
Target:  5'- cGCgCGACgCGgacgagugguuUCggcACgGCGCGGGCGAGg -3'
miRNA:   3'- -UG-GCUGgGU-----------AGa--UGgCGCGCCCGUUC- -5'
29799 5' -59 NC_006273.1 + 1797 0.66 0.890777
Target:  5'- aGCCGAUggugCUGCUggGCGCGuGGCAGGa -3'
miRNA:   3'- -UGGCUGgguaGAUGG--CGCGC-CCGUUC- -5'
29799 5' -59 NC_006273.1 + 19165 0.67 0.830921
Target:  5'- cGCCG-CCCAUgUGCCGCGCuccguacaacgaauGcGGCGu- -3'
miRNA:   3'- -UGGCuGGGUAgAUGGCGCG--------------C-CCGUuc -5'
29799 5' -59 NC_006273.1 + 23769 0.68 0.783106
Target:  5'- aGCCGGCCauaAUC-ACCGuCGauGGCAGGu -3'
miRNA:   3'- -UGGCUGGg--UAGaUGGC-GCgcCCGUUC- -5'
29799 5' -59 NC_006273.1 + 31194 0.7 0.687598
Target:  5'- uGCCGGCCggCGUCcaggcugcccugguUGCCGCuGCGGGUAAc -3'
miRNA:   3'- -UGGCUGG--GUAG--------------AUGGCG-CGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 31468 0.66 0.884269
Target:  5'- uACCG-CCCA-CUACaccuCGCGCGGcGCGc- -3'
miRNA:   3'- -UGGCuGGGUaGAUG----GCGCGCC-CGUuc -5'
29799 5' -59 NC_006273.1 + 38538 0.79 0.24693
Target:  5'- cGCCGGCCCcgCcgcgcaacccagccACCGCGCGGGCAGc -3'
miRNA:   3'- -UGGCUGGGuaGa-------------UGGCGCGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 39569 0.74 0.436539
Target:  5'- uCCGGCCCcgCgGCCGCGaccgagGGGCGGGg -3'
miRNA:   3'- uGGCUGGGuaGaUGGCGCg-----CCCGUUC- -5'
29799 5' -59 NC_006273.1 + 40521 0.66 0.884269
Target:  5'- -gCGACCCGgcgcgCUACCGCucaCGGGgacCGAGg -3'
miRNA:   3'- ugGCUGGGUa----GAUGGCGc--GCCC---GUUC- -5'
29799 5' -59 NC_006273.1 + 70329 0.69 0.736908
Target:  5'- cGCCGugcgucuGCCCGUgagcaccgCUGCCGCGCccgaGGGCAu- -3'
miRNA:   3'- -UGGC-------UGGGUA--------GAUGGCGCG----CCCGUuc -5'
29799 5' -59 NC_006273.1 + 73373 0.71 0.593382
Target:  5'- aGCgGGCCCAgagUCgcaaAgCGCGCGGGCAGc -3'
miRNA:   3'- -UGgCUGGGU---AGa---UgGCGCGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 77999 0.66 0.863548
Target:  5'- cGCCGcCUCAUCUccacccGCCGuCGCaGGCGAc -3'
miRNA:   3'- -UGGCuGGGUAGA------UGGC-GCGcCCGUUc -5'
29799 5' -59 NC_006273.1 + 84041 0.67 0.82531
Target:  5'- cGCCGGCgCCAaaUgaGCCGCgaagcgGCGGGCGGa -3'
miRNA:   3'- -UGGCUG-GGU--AgaUGGCG------CGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 90966 0.67 0.833302
Target:  5'- cCCGAaCCGUCcGCCGcCGCGGcGCcGGg -3'
miRNA:   3'- uGGCUgGGUAGaUGGC-GCGCC-CGuUC- -5'
29799 5' -59 NC_006273.1 + 103546 0.73 0.524626
Target:  5'- aGCCGGCCagccccagGCCGUGCGGGCuGGu -3'
miRNA:   3'- -UGGCUGGguaga---UGGCGCGCCCGuUC- -5'
29799 5' -59 NC_006273.1 + 113508 0.68 0.783107
Target:  5'- aGCCGgcggcggguuGCCCGgggGgCGCGCGGGCGGc -3'
miRNA:   3'- -UGGC----------UGGGUagaUgGCGCGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 113623 0.68 0.791823
Target:  5'- aGCCGACgCUGUUauucaCGCGuCGGGCAAGc -3'
miRNA:   3'- -UGGCUG-GGUAGaug--GCGC-GCCCGUUC- -5'
29799 5' -59 NC_006273.1 + 115318 0.66 0.863548
Target:  5'- gACCGACUuaaaCAUCaaggGCCGCugcgugGUGGGCGAa -3'
miRNA:   3'- -UGGCUGG----GUAGa---UGGCG------CGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 116937 0.67 0.82531
Target:  5'- cGCCGAUUCAgaUCUACCaugucuuuGgGCGGGCucuGGg -3'
miRNA:   3'- -UGGCUGGGU--AGAUGG--------CgCGCCCGu--UC- -5'
29799 5' -59 NC_006273.1 + 117251 0.66 0.875507
Target:  5'- aGCCG-CCgAaaguaacguagaacUCUGCCGCGC-GGCAAa -3'
miRNA:   3'- -UGGCuGGgU--------------AGAUGGCGCGcCCGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.