miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29799 5' -59 NC_006273.1 + 196468 0.66 0.877559
Target:  5'- cGCgCGACgCGgacgagugguuUCggcACgGCGCGGGCGAGg -3'
miRNA:   3'- -UG-GCUGgGU-----------AGa--UGgCGCGCCCGUUC- -5'
29799 5' -59 NC_006273.1 + 124424 0.68 0.783107
Target:  5'- -gCGACaCGUgCUgcgGCCGCGCGGGCGu- -3'
miRNA:   3'- ugGCUGgGUA-GA---UGGCGCGCCCGUuc -5'
29799 5' -59 NC_006273.1 + 113508 0.68 0.783107
Target:  5'- aGCCGgcggcggguuGCCCGgggGgCGCGCGGGCGGc -3'
miRNA:   3'- -UGGC----------UGGGUagaUgGCGCGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 167381 0.67 0.81716
Target:  5'- cGCC-ACCCAUgacGCCGC-CGGGCAGa -3'
miRNA:   3'- -UGGcUGGGUAga-UGGCGcGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 212262 0.67 0.830922
Target:  5'- cACCGAguugcgguguucugUCUGUCUACUGgGUGGGgGAGg -3'
miRNA:   3'- -UGGCU--------------GGGUAGAUGGCgCGCCCgUUC- -5'
29799 5' -59 NC_006273.1 + 141066 0.67 0.841127
Target:  5'- cACCGucucgcuuuucCCCGUCUACCaCGUcGGCAAGu -3'
miRNA:   3'- -UGGCu----------GGGUAGAUGGcGCGcCCGUUC- -5'
29799 5' -59 NC_006273.1 + 213634 0.67 0.848023
Target:  5'- aGCgaGGCCCccaggcagcugagAUCUACCGC-CaGGGCGAGa -3'
miRNA:   3'- -UGg-CUGGG-------------UAGAUGGCGcG-CCCGUUC- -5'
29799 5' -59 NC_006273.1 + 151243 0.66 0.856256
Target:  5'- cGCCGcucCUCGUCUGCCgugaucaagcgGCGCGGcGCGGa -3'
miRNA:   3'- -UGGCu--GGGUAGAUGG-----------CGCGCC-CGUUc -5'
29799 5' -59 NC_006273.1 + 77999 0.66 0.863548
Target:  5'- cGCCGcCUCAUCUccacccGCCGuCGCaGGCGAc -3'
miRNA:   3'- -UGGCuGGGUAGA------UGGC-GCGcCCGUUc -5'
29799 5' -59 NC_006273.1 + 190599 0.68 0.774267
Target:  5'- cGCCGgcGCCCAUCgGCCGCGCGa----- -3'
miRNA:   3'- -UGGC--UGGGUAGaUGGCGCGCccguuc -5'
29799 5' -59 NC_006273.1 + 221806 0.69 0.709612
Target:  5'- -gCGGCCCGg--GCCGCccgGCGGGUGAGc -3'
miRNA:   3'- ugGCUGGGUagaUGGCG---CGCCCGUUC- -5'
29799 5' -59 NC_006273.1 + 179074 0.69 0.709612
Target:  5'- aGCCaACCC-UCUGCUuuUGCGGGCAAGc -3'
miRNA:   3'- -UGGcUGGGuAGAUGGc-GCGCCCGUUC- -5'
29799 5' -59 NC_006273.1 + 163028 0.75 0.411303
Target:  5'- cUCGACCCAgcagcGCCcacaGCGCGGGCGAGa -3'
miRNA:   3'- uGGCUGGGUaga--UGG----CGCGCCCGUUC- -5'
29799 5' -59 NC_006273.1 + 118314 0.74 0.428027
Target:  5'- uGCCG-CCUcgCUACCGCGuCGGGUucuGAGg -3'
miRNA:   3'- -UGGCuGGGuaGAUGGCGC-GCCCG---UUC- -5'
29799 5' -59 NC_006273.1 + 234462 0.74 0.436539
Target:  5'- uCCGGCCCcgCgGCCGCGaccgagGGGCGGGg -3'
miRNA:   3'- uGGCUGGGuaGaUGGCGCg-----CCCGUUC- -5'
29799 5' -59 NC_006273.1 + 143415 0.73 0.517157
Target:  5'- cGCCGGCgCGgcCUGCCGCGCGuuggagaacGGCAAGc -3'
miRNA:   3'- -UGGCUGgGUa-GAUGGCGCGC---------CCGUUC- -5'
29799 5' -59 NC_006273.1 + 103546 0.73 0.524626
Target:  5'- aGCCGGCCagccccagGCCGUGCGGGCuGGu -3'
miRNA:   3'- -UGGCUGGguaga---UGGCGCGCCCGuUC- -5'
29799 5' -59 NC_006273.1 + 154366 0.72 0.57406
Target:  5'- cACCGucucuuugaucuGCCCGUCUACUGCGUGGuCAAc -3'
miRNA:   3'- -UGGC------------UGGGUAGAUGGCGCGCCcGUUc -5'
29799 5' -59 NC_006273.1 + 73373 0.71 0.593382
Target:  5'- aGCgGGCCCAgagUCgcaaAgCGCGCGGGCAGc -3'
miRNA:   3'- -UGgCUGGGU---AGa---UgGCGCGCCCGUUc -5'
29799 5' -59 NC_006273.1 + 118111 0.71 0.622542
Target:  5'- aACgCGAUCUGUUUGCCGCGC-GGCAGa -3'
miRNA:   3'- -UG-GCUGGGUAGAUGGCGCGcCCGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.