miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29801 3' -49.8 NC_006273.1 + 1698 0.66 0.999707
Target:  5'- cGUUGCUGCGCGccgaggaggcGACGGCg -3'
miRNA:   3'- aCAACGGUGUGCacaauagu--CUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 111352 0.66 0.999686
Target:  5'- ---cGCCGCugG-GU--UCAG-CGGCg -3'
miRNA:   3'- acaaCGGUGugCaCAauAGUCuGCCG- -5'
29801 3' -49.8 NC_006273.1 + 170663 0.66 0.999686
Target:  5'- ---aGCCGCGCGUc----CAGACGcGCg -3'
miRNA:   3'- acaaCGGUGUGCAcaauaGUCUGC-CG- -5'
29801 3' -49.8 NC_006273.1 + 45557 0.66 0.999686
Target:  5'- --aUGCCACccgGCGUGgccg-AGGCGGUa -3'
miRNA:   3'- acaACGGUG---UGCACaauagUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 200656 0.66 0.999686
Target:  5'- cUGUugUGUCGCACGcccgaggAUCuGGCGGCc -3'
miRNA:   3'- -ACA--ACGGUGUGCacaa---UAGuCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 22055 0.66 0.999686
Target:  5'- --gUGCUACugGUGUUccgaAUCGuacCGGCg -3'
miRNA:   3'- acaACGGUGugCACAA----UAGUcu-GCCG- -5'
29801 3' -49.8 NC_006273.1 + 30149 0.66 0.999686
Target:  5'- --aUGUgACGCGccgaGUCAGugGGCg -3'
miRNA:   3'- acaACGgUGUGCacaaUAGUCugCCG- -5'
29801 3' -49.8 NC_006273.1 + 155446 0.66 0.999686
Target:  5'- cGUgcccgGCgACGCGgGUUcUguGGCGGCu -3'
miRNA:   3'- aCAa----CGgUGUGCaCAAuAguCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 229605 0.66 0.999671
Target:  5'- cUGgaagUGUCACGCGUuauacgccgaGUgGGACGGCa -3'
miRNA:   3'- -ACa---ACGGUGUGCAcaa-------UAgUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 113519 0.66 0.999671
Target:  5'- gGUUGCC-CGgGgggcgcgCGGGCGGCg -3'
miRNA:   3'- aCAACGGuGUgCacaaua-GUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 118122 0.66 0.999671
Target:  5'- -uUUGCCGCGCGgcagaguucuacGUUAcuuUCGG-CGGCu -3'
miRNA:   3'- acAACGGUGUGCa-----------CAAU---AGUCuGCCG- -5'
29801 3' -49.8 NC_006273.1 + 177319 0.66 0.999607
Target:  5'- ---gGCgACGCaGUGUcUGUucCAGGCGGCa -3'
miRNA:   3'- acaaCGgUGUG-CACA-AUA--GUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 218182 0.66 0.999607
Target:  5'- cGUcGUCGuCGCGUGgcAU-GGGCGGCg -3'
miRNA:   3'- aCAaCGGU-GUGCACaaUAgUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 132128 0.66 0.999598
Target:  5'- --gUGCUGgGCGUGUugcagagUAUCAG-CGGUa -3'
miRNA:   3'- acaACGGUgUGCACA-------AUAGUCuGCCG- -5'
29801 3' -49.8 NC_006273.1 + 203802 0.66 0.999598
Target:  5'- cGgaGCCACAuaguucgguucacCGUGUUGUC--GCGGUu -3'
miRNA:   3'- aCaaCGGUGU-------------GCACAAUAGucUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 8349 0.66 0.999511
Target:  5'- --gUGCCGC-CG-GUUGguggCuGGCGGCa -3'
miRNA:   3'- acaACGGUGuGCaCAAUa---GuCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 17396 0.66 0.999511
Target:  5'- gGUUGCCGCGCGUaugg-CcGcCGGCc -3'
miRNA:   3'- aCAACGGUGUGCAcaauaGuCuGCCG- -5'
29801 3' -49.8 NC_006273.1 + 169735 0.66 0.999395
Target:  5'- ---aGgCGCugGUGUUggCAGgcaACGGCg -3'
miRNA:   3'- acaaCgGUGugCACAAuaGUC---UGCCG- -5'
29801 3' -49.8 NC_006273.1 + 14638 0.66 0.999395
Target:  5'- uUGUUGCCcgagcCACGUcGcgAUCAccauGAUGGCa -3'
miRNA:   3'- -ACAACGGu----GUGCA-CaaUAGU----CUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 196591 0.66 0.999356
Target:  5'- cGUUGCUGCGCGccgagaggcGACGGCg -3'
miRNA:   3'- aCAACGGUGUGCacaauagu-CUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.