Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29801 | 3' | -49.8 | NC_006273.1 | + | 229605 | 0.66 | 0.999671 |
Target: 5'- cUGgaagUGUCACGCGUuauacgccgaGUgGGACGGCa -3' miRNA: 3'- -ACa---ACGGUGUGCAcaa-------UAgUCUGCCG- -5' |
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29801 | 3' | -49.8 | NC_006273.1 | + | 196591 | 0.66 | 0.999356 |
Target: 5'- cGUUGCUGCGCGccgagaggcGACGGCg -3' miRNA: 3'- aCAACGGUGUGCacaauagu-CUGCCG- -5' |
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29801 | 3' | -49.8 | NC_006273.1 | + | 8349 | 0.66 | 0.999511 |
Target: 5'- --gUGCCGC-CG-GUUGguggCuGGCGGCa -3' miRNA: 3'- acaACGGUGuGCaCAAUa---GuCUGCCG- -5' |
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29801 | 3' | -49.8 | NC_006273.1 | + | 118122 | 0.66 | 0.999671 |
Target: 5'- -uUUGCCGCGCGgcagaguucuacGUUAcuuUCGG-CGGCu -3' miRNA: 3'- acAACGGUGUGCa-----------CAAU---AGUCuGCCG- -5' |
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29801 | 3' | -49.8 | NC_006273.1 | + | 203802 | 0.66 | 0.999598 |
Target: 5'- cGgaGCCACAuaguucgguucacCGUGUUGUC--GCGGUu -3' miRNA: 3'- aCaaCGGUGU-------------GCACAAUAGucUGCCG- -5' |
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29801 | 3' | -49.8 | NC_006273.1 | + | 132128 | 0.66 | 0.999598 |
Target: 5'- --gUGCUGgGCGUGUugcagagUAUCAG-CGGUa -3' miRNA: 3'- acaACGGUgUGCACA-------AUAGUCuGCCG- -5' |
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29801 | 3' | -49.8 | NC_006273.1 | + | 218182 | 0.66 | 0.999607 |
Target: 5'- cGUcGUCGuCGCGUGgcAU-GGGCGGCg -3' miRNA: 3'- aCAaCGGU-GUGCACaaUAgUCUGCCG- -5' |
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29801 | 3' | -49.8 | NC_006273.1 | + | 113519 | 0.66 | 0.999671 |
Target: 5'- gGUUGCC-CGgGgggcgcgCGGGCGGCg -3' miRNA: 3'- aCAACGGuGUgCacaaua-GUCUGCCG- -5' |
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29801 | 3' | -49.8 | NC_006273.1 | + | 22055 | 0.66 | 0.999686 |
Target: 5'- --gUGCUACugGUGUUccgaAUCGuacCGGCg -3' miRNA: 3'- acaACGGUGugCACAA----UAGUcu-GCCG- -5' |
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29801 | 3' | -49.8 | NC_006273.1 | + | 197199 | 0.66 | 0.999257 |
Target: 5'- gGUacUGCCcgcuggacggGCACGUGUacccgCuGGCGGCg -3' miRNA: 3'- aCA--ACGG----------UGUGCACAaua--GuCUGCCG- -5' |
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29801 | 3' | -49.8 | NC_006273.1 | + | 105612 | 0.66 | 0.999257 |
Target: 5'- gGUU-CCGCGCGUGaacUCAGG-GGCg -3' miRNA: 3'- aCAAcGGUGUGCACaauAGUCUgCCG- -5' |
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29801 | 3' | -49.8 | NC_006273.1 | + | 2306 | 0.66 | 0.999257 |
Target: 5'- gGUacUGCCcgcuggacggGCACGUGUacccgCuGGCGGCg -3' miRNA: 3'- aCA--ACGG----------UGUGCACAaua--GuCUGCCG- -5' |
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29801 | 3' | -49.8 | NC_006273.1 | + | 30149 | 0.66 | 0.999686 |
Target: 5'- --aUGUgACGCGccgaGUCAGugGGCg -3' miRNA: 3'- acaACGgUGUGCacaaUAGUCugCCG- -5' |
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29801 | 3' | -49.8 | NC_006273.1 | + | 228553 | 0.66 | 0.999257 |
Target: 5'- --cUGCCAUAUGUGUUGUCAaACu-- -3' miRNA: 3'- acaACGGUGUGCACAAUAGUcUGccg -5' |
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29801 | 3' | -49.8 | NC_006273.1 | + | 73149 | 0.66 | 0.999257 |
Target: 5'- cGcUGCCACccaACGaGgacacgCAGACGGCg -3' miRNA: 3'- aCaACGGUG---UGCaCaaua--GUCUGCCG- -5' |
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29801 | 3' | -49.8 | NC_006273.1 | + | 37369 | 0.66 | 0.999257 |
Target: 5'- -uUUGCauaaGCGCGgagGuUUGUCuGGCGGCu -3' miRNA: 3'- acAACGg---UGUGCa--C-AAUAGuCUGCCG- -5' |
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29801 | 3' | -49.8 | NC_006273.1 | + | 14638 | 0.66 | 0.999395 |
Target: 5'- uUGUUGCCcgagcCACGUcGcgAUCAccauGAUGGCa -3' miRNA: 3'- -ACAACGGu----GUGCA-CaaUAGU----CUGCCG- -5' |
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29801 | 3' | -49.8 | NC_006273.1 | + | 153702 | 0.66 | 0.999257 |
Target: 5'- --gUGCCGCgagGCGUcauGUUcgacgGUCAGACGGg -3' miRNA: 3'- acaACGGUG---UGCA---CAA-----UAGUCUGCCg -5' |
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29801 | 3' | -49.8 | NC_006273.1 | + | 1698 | 0.66 | 0.999707 |
Target: 5'- cGUUGCUGCGCGccgaggaggcGACGGCg -3' miRNA: 3'- aCAACGGUGUGCacaauagu--CUGCCG- -5' |
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29801 | 3' | -49.8 | NC_006273.1 | + | 55864 | 0.66 | 0.999257 |
Target: 5'- aUGUUgGCCucUACGUGgccuacgUGUCAacGACGGUg -3' miRNA: 3'- -ACAA-CGGu-GUGCACa------AUAGU--CUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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