miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29801 3' -49.8 NC_006273.1 + 145356 1.12 0.011534
Target:  5'- uUGUUGCCACACGUGUUAUCAGACGGCc -3'
miRNA:   3'- -ACAACGGUGUGCACAAUAGUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 147977 0.78 0.773382
Target:  5'- gUGUUGgCGCGCGUGUUGcUAGAaGGCa -3'
miRNA:   3'- -ACAACgGUGUGCACAAUaGUCUgCCG- -5'
29801 3' -49.8 NC_006273.1 + 60005 0.76 0.836108
Target:  5'- ---cGCCACAgCGcGUuccUGUCGGACGGCa -3'
miRNA:   3'- acaaCGGUGU-GCaCA---AUAGUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 162615 0.76 0.844373
Target:  5'- aGcgGCUGCACGcGUUGUUGGACGGUg -3'
miRNA:   3'- aCaaCGGUGUGCaCAAUAGUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 32392 0.76 0.8603
Target:  5'- cGUcGCCACACGUGUgga-AGACauGGCg -3'
miRNA:   3'- aCAaCGGUGUGCACAauagUCUG--CCG- -5'
29801 3' -49.8 NC_006273.1 + 204415 0.74 0.919768
Target:  5'- aGUUGCCACGCacaagc-CAGGCGGCc -3'
miRNA:   3'- aCAACGGUGUGcacaauaGUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 93827 0.73 0.931734
Target:  5'- cGUUGCCACGCGgaUUAUgGGAugUGGCc -3'
miRNA:   3'- aCAACGGUGUGCacAAUAgUCU--GCCG- -5'
29801 3' -49.8 NC_006273.1 + 192828 0.73 0.940168
Target:  5'- ---cGgCACGCGUGUUAUuguagguucguugcCAGAUGGCa -3'
miRNA:   3'- acaaCgGUGUGCACAAUA--------------GUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 41246 0.72 0.954541
Target:  5'- ---cGCgGCGCGUGgaGUC-GACGGCc -3'
miRNA:   3'- acaaCGgUGUGCACaaUAGuCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 71691 0.72 0.958388
Target:  5'- aUGUgGCCGCcgACGUGg---CAGGCGGUc -3'
miRNA:   3'- -ACAaCGGUG--UGCACaauaGUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 139661 0.72 0.9654
Target:  5'- cGUUGUCGCggACGUGgcuUGUgGGACGGg -3'
miRNA:   3'- aCAACGGUG--UGCACa--AUAgUCUGCCg -5'
29801 3' -49.8 NC_006273.1 + 144645 0.72 0.968575
Target:  5'- cGgaGCCGCGUGUGcugAUCgAGGCGGCg -3'
miRNA:   3'- aCaaCGGUGUGCACaa-UAG-UCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 226856 0.71 0.979213
Target:  5'- gGUUGCCuACuACGgggGUUGUUguauGGugGGCg -3'
miRNA:   3'- aCAACGG-UG-UGCa--CAAUAG----UCugCCG- -5'
29801 3' -49.8 NC_006273.1 + 118311 0.71 0.979213
Target:  5'- aGUUGCCGCcucgcuaccGCGUcggGUUcUgAGGCGGCa -3'
miRNA:   3'- aCAACGGUG---------UGCA---CAAuAgUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 218514 0.7 0.983398
Target:  5'- ---cGCCGCAgacCGUGUUcgUAG-CGGCg -3'
miRNA:   3'- acaaCGGUGU---GCACAAuaGUCuGCCG- -5'
29801 3' -49.8 NC_006273.1 + 141335 0.7 0.983398
Target:  5'- cGUgGCCGCACaccUGUUGgagcaaCGGGCGGCc -3'
miRNA:   3'- aCAaCGGUGUGc--ACAAUa-----GUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 196981 0.7 0.984701
Target:  5'- cUGUUGCCGCcaccgcaGCGgcggcgaCGGACGGCg -3'
miRNA:   3'- -ACAACGGUG-------UGCacaaua-GUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 190128 0.7 0.987541
Target:  5'- cUGUUGCgGCGCGagcagccgcCGGGCGGCa -3'
miRNA:   3'- -ACAACGgUGUGCacaaua---GUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 203918 0.7 0.988439
Target:  5'- ---cGCCGCGCGagGUg--UAGugGGCg -3'
miRNA:   3'- acaaCGGUGUGCa-CAauaGUCugCCG- -5'
29801 3' -49.8 NC_006273.1 + 103133 0.7 0.98901
Target:  5'- gUGUaGCCACACG-GUcucgGUCAGggccucguccgagaaACGGCu -3'
miRNA:   3'- -ACAaCGGUGUGCaCAa---UAGUC---------------UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.