miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29801 3' -49.8 NC_006273.1 + 105612 0.66 0.999257
Target:  5'- gGUU-CCGCGCGUGaacUCAGG-GGCg -3'
miRNA:   3'- aCAAcGGUGUGCACaauAGUCUgCCG- -5'
29801 3' -49.8 NC_006273.1 + 197199 0.66 0.999257
Target:  5'- gGUacUGCCcgcuggacggGCACGUGUacccgCuGGCGGCg -3'
miRNA:   3'- aCA--ACGG----------UGUGCACAaua--GuCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 37369 0.66 0.999257
Target:  5'- -uUUGCauaaGCGCGgagGuUUGUCuGGCGGCu -3'
miRNA:   3'- acAACGg---UGUGCa--C-AAUAGuCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 73149 0.66 0.999257
Target:  5'- cGcUGCCACccaACGaGgacacgCAGACGGCg -3'
miRNA:   3'- aCaACGGUG---UGCaCaaua--GUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 2306 0.66 0.999257
Target:  5'- gGUacUGCCcgcuggacggGCACGUGUacccgCuGGCGGCg -3'
miRNA:   3'- aCA--ACGG----------UGUGCACAaua--GuCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 55864 0.66 0.999257
Target:  5'- aUGUUgGCCucUACGUGgccuacgUGUCAacGACGGUg -3'
miRNA:   3'- -ACAA-CGGu-GUGCACa------AUAGU--CUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 153702 0.66 0.999257
Target:  5'- --gUGCCGCgagGCGUcauGUUcgacgGUCAGACGGg -3'
miRNA:   3'- acaACGGUG---UGCA---CAA-----UAGUCUGCCg -5'
29801 3' -49.8 NC_006273.1 + 228553 0.66 0.999257
Target:  5'- --cUGCCAUAUGUGUUGUCAaACu-- -3'
miRNA:   3'- acaACGGUGUGCACAAUAGUcUGccg -5'
29801 3' -49.8 NC_006273.1 + 53852 0.67 0.999161
Target:  5'- gUGUUGUUACccacuucgaucagcaACGUGUUAUCGG-CaGGUg -3'
miRNA:   3'- -ACAACGGUG---------------UGCACAAUAGUCuG-CCG- -5'
29801 3' -49.8 NC_006273.1 + 234050 0.67 0.999092
Target:  5'- --gUGCgGCAUGUGUguguugUAGugGGUg -3'
miRNA:   3'- acaACGgUGUGCACAaua---GUCugCCG- -5'
29801 3' -49.8 NC_006273.1 + 174198 0.67 0.998897
Target:  5'- uUGUgcgGCaCACugGUGg---UGGugGGCa -3'
miRNA:   3'- -ACAa--CG-GUGugCACaauaGUCugCCG- -5'
29801 3' -49.8 NC_006273.1 + 106226 0.67 0.998897
Target:  5'- --gUGCCGCGgGUGgc--CAG-CGGCg -3'
miRNA:   3'- acaACGGUGUgCACaauaGUCuGCCG- -5'
29801 3' -49.8 NC_006273.1 + 220164 0.67 0.998897
Target:  5'- ---cGCCGCACGUaGUgguugggGUCguccaucuGGAUGGCg -3'
miRNA:   3'- acaaCGGUGUGCA-CAa------UAG--------UCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 151687 0.67 0.998875
Target:  5'- cUGUUgGCCACAgGcgGUUGUCcuccaccgccagcGGACGGa -3'
miRNA:   3'- -ACAA-CGGUGUgCa-CAAUAG-------------UCUGCCg -5'
29801 3' -49.8 NC_006273.1 + 167018 0.67 0.998763
Target:  5'- cGUUGCCGCACGaGgcgcugauuugCAGcugcACGGCc -3'
miRNA:   3'- aCAACGGUGUGCaCaaua-------GUC----UGCCG- -5'
29801 3' -49.8 NC_006273.1 + 138757 0.67 0.998667
Target:  5'- cGUaGUCGCGCGcGaagGUguGGCGGCa -3'
miRNA:   3'- aCAaCGGUGUGCaCaa-UAguCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 193969 0.67 0.998397
Target:  5'- ---gGCCAUGUGUGguggCAGAUGGCg -3'
miRNA:   3'- acaaCGGUGUGCACaauaGUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 82098 0.67 0.998397
Target:  5'- cGUUGCCGCGgCGguaGUUGcggCAGAgGGg -3'
miRNA:   3'- aCAACGGUGU-GCa--CAAUa--GUCUgCCg -5'
29801 3' -49.8 NC_006273.1 + 196510 0.67 0.998397
Target:  5'- uUGUaGCCGCagcccuGCGUGUUGUUguaaauGACGGg -3'
miRNA:   3'- -ACAaCGGUG------UGCACAAUAGu-----CUGCCg -5'
29801 3' -49.8 NC_006273.1 + 21705 0.67 0.998397
Target:  5'- cGUcGCCGCAgGccuUUGUCGGcGCGGCu -3'
miRNA:   3'- aCAaCGGUGUgCac-AAUAGUC-UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.