miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29801 3' -49.8 NC_006273.1 + 84 0.68 0.996262
Target:  5'- gGUgUGCCGCGgGUGUgucgCGGGCGuGUg -3'
miRNA:   3'- aCA-ACGGUGUgCACAaua-GUCUGC-CG- -5'
29801 3' -49.8 NC_006273.1 + 1698 0.66 0.999707
Target:  5'- cGUUGCUGCGCGccgaggaggcGACGGCg -3'
miRNA:   3'- aCAACGGUGUGCacaauagu--CUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 2306 0.66 0.999257
Target:  5'- gGUacUGCCcgcuggacggGCACGUGUacccgCuGGCGGCg -3'
miRNA:   3'- aCA--ACGG----------UGUGCACAaua--GuCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 8349 0.66 0.999511
Target:  5'- --gUGCCGC-CG-GUUGguggCuGGCGGCa -3'
miRNA:   3'- acaACGGUGuGCaCAAUa---GuCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 14638 0.66 0.999395
Target:  5'- uUGUUGCCcgagcCACGUcGcgAUCAccauGAUGGCa -3'
miRNA:   3'- -ACAACGGu----GUGCA-CaaUAGU----CUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 17396 0.66 0.999511
Target:  5'- gGUUGCCGCGCGUaugg-CcGcCGGCc -3'
miRNA:   3'- aCAACGGUGUGCAcaauaGuCuGCCG- -5'
29801 3' -49.8 NC_006273.1 + 21705 0.67 0.998397
Target:  5'- cGUcGCCGCAgGccuUUGUCGGcGCGGCu -3'
miRNA:   3'- aCAaCGGUGUgCac-AAUAGUC-UGCCG- -5'
29801 3' -49.8 NC_006273.1 + 22055 0.66 0.999686
Target:  5'- --gUGCUACugGUGUUccgaAUCGuacCGGCg -3'
miRNA:   3'- acaACGGUGugCACAA----UAGUcu-GCCG- -5'
29801 3' -49.8 NC_006273.1 + 30149 0.66 0.999686
Target:  5'- --aUGUgACGCGccgaGUCAGugGGCg -3'
miRNA:   3'- acaACGgUGUGCacaaUAGUCugCCG- -5'
29801 3' -49.8 NC_006273.1 + 32392 0.76 0.8603
Target:  5'- cGUcGCCACACGUGUgga-AGACauGGCg -3'
miRNA:   3'- aCAaCGGUGUGCACAauagUCUG--CCG- -5'
29801 3' -49.8 NC_006273.1 + 36422 0.68 0.995633
Target:  5'- aGUUGagcggggUAUGCGUGUUcaGUUGGGCGGCa -3'
miRNA:   3'- aCAACg------GUGUGCACAA--UAGUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 37369 0.66 0.999257
Target:  5'- -uUUGCauaaGCGCGgagGuUUGUCuGGCGGCu -3'
miRNA:   3'- acAACGg---UGUGCa--C-AAUAGuCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 41246 0.72 0.954541
Target:  5'- ---cGCgGCGCGUGgaGUC-GACGGCc -3'
miRNA:   3'- acaaCGgUGUGCACaaUAGuCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 45557 0.66 0.999686
Target:  5'- --aUGCCACccgGCGUGgccg-AGGCGGUa -3'
miRNA:   3'- acaACGGUG---UGCACaauagUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 53852 0.67 0.999161
Target:  5'- gUGUUGUUACccacuucgaucagcaACGUGUUAUCGG-CaGGUg -3'
miRNA:   3'- -ACAACGGUG---------------UGCACAAUAGUCuG-CCG- -5'
29801 3' -49.8 NC_006273.1 + 54878 0.68 0.997298
Target:  5'- --aUGUCGaACGUGUUcgCGgcGACGGCg -3'
miRNA:   3'- acaACGGUgUGCACAAuaGU--CUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 55864 0.66 0.999257
Target:  5'- aUGUUgGCCucUACGUGgccuacgUGUCAacGACGGUg -3'
miRNA:   3'- -ACAA-CGGu-GUGCACa------AUAGU--CUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 60005 0.76 0.836108
Target:  5'- ---cGCCACAgCGcGUuccUGUCGGACGGCa -3'
miRNA:   3'- acaaCGGUGU-GCaCA---AUAGUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 60270 0.68 0.997757
Target:  5'- cGcUGUCACGCGUcaacgacagcaCAGACGGCg -3'
miRNA:   3'- aCaACGGUGUGCAcaaua------GUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 61838 0.68 0.996815
Target:  5'- ---aGCCACGCcacgGUa--CAGACGGCg -3'
miRNA:   3'- acaaCGGUGUGca--CAauaGUCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.