miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29801 3' -49.8 NC_006273.1 + 164904 0.68 0.997112
Target:  5'- gGUUGaCGCGCGUcugcuucagcUCGGGCGGCa -3'
miRNA:   3'- aCAACgGUGUGCAcaau------AGUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 103133 0.7 0.98901
Target:  5'- gUGUaGCCACACG-GUcucgGUCAGggccucguccgagaaACGGCu -3'
miRNA:   3'- -ACAaCGGUGUGCaCAa---UAGUC---------------UGCCG- -5'
29801 3' -49.8 NC_006273.1 + 223542 0.7 0.989824
Target:  5'- aUGgUGCCGCGCGUGgag-CGGcacuUGGCa -3'
miRNA:   3'- -ACaACGGUGUGCACaauaGUCu---GCCG- -5'
29801 3' -49.8 NC_006273.1 + 62272 0.69 0.992203
Target:  5'- --aUGCCcUACGUGUUGUUu--CGGCg -3'
miRNA:   3'- acaACGGuGUGCACAAUAGucuGCCG- -5'
29801 3' -49.8 NC_006273.1 + 148855 0.69 0.994031
Target:  5'- cUGUUGCCGCcgcugccGCGUGac----GACGGCg -3'
miRNA:   3'- -ACAACGGUG-------UGCACaauaguCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 105893 0.69 0.994117
Target:  5'- cGUUGCagcaACGCGUGcucggGUguGugGGUg -3'
miRNA:   3'- aCAACGg---UGUGCACaa---UAguCugCCG- -5'
29801 3' -49.8 NC_006273.1 + 188205 0.69 0.994117
Target:  5'- --cUGCCGCuCGUGgug-CcGACGGCa -3'
miRNA:   3'- acaACGGUGuGCACaauaGuCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 194977 0.68 0.996262
Target:  5'- gGUgUGCCGCGgGUGUgucgCGGGCGuGUg -3'
miRNA:   3'- aCA-ACGGUGUgCACAaua-GUCUGC-CG- -5'
29801 3' -49.8 NC_006273.1 + 61838 0.68 0.996815
Target:  5'- ---aGCCACGCcacgGUa--CAGACGGCg -3'
miRNA:   3'- acaaCGGUGUGca--CAauaGUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 218514 0.7 0.983398
Target:  5'- ---cGCCGCAgacCGUGUUcgUAG-CGGCg -3'
miRNA:   3'- acaaCGGUGU---GCACAAuaGUCuGCCG- -5'
29801 3' -49.8 NC_006273.1 + 141335 0.7 0.983398
Target:  5'- cGUgGCCGCACaccUGUUGgagcaaCGGGCGGCc -3'
miRNA:   3'- aCAaCGGUGUGc--ACAAUa-----GUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 226856 0.71 0.979213
Target:  5'- gGUUGCCuACuACGgggGUUGUUguauGGugGGCg -3'
miRNA:   3'- aCAACGG-UG-UGCa--CAAUAG----UCugCCG- -5'
29801 3' -49.8 NC_006273.1 + 60005 0.76 0.836108
Target:  5'- ---cGCCACAgCGcGUuccUGUCGGACGGCa -3'
miRNA:   3'- acaaCGGUGU-GCaCA---AUAGUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 204415 0.74 0.919768
Target:  5'- aGUUGCCACGCacaagc-CAGGCGGCc -3'
miRNA:   3'- aCAACGGUGUGcacaauaGUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 93827 0.73 0.931734
Target:  5'- cGUUGCCACGCGgaUUAUgGGAugUGGCc -3'
miRNA:   3'- aCAACGGUGUGCacAAUAgUCU--GCCG- -5'
29801 3' -49.8 NC_006273.1 + 192828 0.73 0.940168
Target:  5'- ---cGgCACGCGUGUUAUuguagguucguugcCAGAUGGCa -3'
miRNA:   3'- acaaCgGUGUGCACAAUA--------------GUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 41246 0.72 0.954541
Target:  5'- ---cGCgGCGCGUGgaGUC-GACGGCc -3'
miRNA:   3'- acaaCGgUGUGCACaaUAGuCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 71691 0.72 0.958388
Target:  5'- aUGUgGCCGCcgACGUGg---CAGGCGGUc -3'
miRNA:   3'- -ACAaCGGUG--UGCACaauaGUCUGCCG- -5'
29801 3' -49.8 NC_006273.1 + 139661 0.72 0.9654
Target:  5'- cGUUGUCGCggACGUGgcuUGUgGGACGGg -3'
miRNA:   3'- aCAACGGUG--UGCACa--AUAgUCUGCCg -5'
29801 3' -49.8 NC_006273.1 + 118311 0.71 0.979213
Target:  5'- aGUUGCCGCcucgcuaccGCGUcggGUUcUgAGGCGGCa -3'
miRNA:   3'- aCAACGGUG---------UGCA---CAAuAgUCUGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.