miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29801 5' -61 NC_006273.1 + 90010 0.66 0.8087
Target:  5'- gGUGCGCACCCGCacgaagGCCgucugauaacaCGUGuG-GCa -3'
miRNA:   3'- -CACGCGUGGGCGaa----CGG-----------GCAC-CaCGg -5'
29801 5' -61 NC_006273.1 + 67967 0.66 0.8087
Target:  5'- -aGCGCGCCCGCca--CUGUGGaagucUGUCu -3'
miRNA:   3'- caCGCGUGGGCGaacgGGCACC-----ACGG- -5'
29801 5' -61 NC_006273.1 + 13187 0.66 0.8087
Target:  5'- -cGCGaacaaacaGCCCGCUacggGCCCGUGcG-GCg -3'
miRNA:   3'- caCGCg-------UGGGCGAa---CGGGCAC-CaCGg -5'
29801 5' -61 NC_006273.1 + 201965 0.66 0.800314
Target:  5'- cUGuCGCGCgCCGCcgacGCCCGaggcGGUGCg -3'
miRNA:   3'- cAC-GCGUG-GGCGaa--CGGGCa---CCACGg -5'
29801 5' -61 NC_006273.1 + 142100 0.66 0.800314
Target:  5'- uUGCGCugCCGCgaaaccucgGCCaUGUGGUcGUUc -3'
miRNA:   3'- cACGCGugGGCGaa-------CGG-GCACCA-CGG- -5'
29801 5' -61 NC_006273.1 + 76603 0.66 0.791792
Target:  5'- uUGUGUAaCCGCUacgcGUCCGUGGccgcgGCCg -3'
miRNA:   3'- cACGCGUgGGCGAa---CGGGCACCa----CGG- -5'
29801 5' -61 NC_006273.1 + 185425 0.66 0.783142
Target:  5'- aUGCgGCACCCGgcUGCaCGUGGccugGCCc -3'
miRNA:   3'- cACG-CGUGGGCgaACGgGCACCa---CGG- -5'
29801 5' -61 NC_006273.1 + 160441 0.66 0.783142
Target:  5'- ---aGUAUCUGCUgagauUGUCCGUGGUGUa -3'
miRNA:   3'- cacgCGUGGGCGA-----ACGGGCACCACGg -5'
29801 5' -61 NC_006273.1 + 152780 0.66 0.783142
Target:  5'- -aGCGCGCCCaGCacGCCCGUu-UGCa -3'
miRNA:   3'- caCGCGUGGG-CGaaCGGGCAccACGg -5'
29801 5' -61 NC_006273.1 + 143282 0.66 0.77437
Target:  5'- uUGCGagaccagauuCAUCgCGCUUGUaccaCCGUGGUGCg -3'
miRNA:   3'- cACGC----------GUGG-GCGAACG----GGCACCACGg -5'
29801 5' -61 NC_006273.1 + 68542 0.66 0.77437
Target:  5'- --cUGCAUCCGU---CCgGUGGUGCCg -3'
miRNA:   3'- cacGCGUGGGCGaacGGgCACCACGG- -5'
29801 5' -61 NC_006273.1 + 14355 0.66 0.773487
Target:  5'- uGUGCcgccggaGCucCCCGCgcUGCCUGUGGcgGCUg -3'
miRNA:   3'- -CACG-------CGu-GGGCGa-ACGGGCACCa-CGG- -5'
29801 5' -61 NC_006273.1 + 35715 0.66 0.766379
Target:  5'- -gGCGUGCCCGU--GCCCGgagacccagaucucgGGcGCCg -3'
miRNA:   3'- caCGCGUGGGCGaaCGGGCa--------------CCaCGG- -5'
29801 5' -61 NC_006273.1 + 173717 0.66 0.765486
Target:  5'- --aCGCcUCCGCuUUGUCCGUGGcccgUGCCc -3'
miRNA:   3'- cacGCGuGGGCG-AACGGGCACC----ACGG- -5'
29801 5' -61 NC_006273.1 + 102870 0.66 0.765486
Target:  5'- gGUGgGCACgCGCUuuUGaagaaauagaCCG-GGUGCCg -3'
miRNA:   3'- -CACgCGUGgGCGA--ACg---------GGCaCCACGG- -5'
29801 5' -61 NC_006273.1 + 31887 0.66 0.765486
Target:  5'- -cGUGCACCaaauGCaaaCCCauGUGGUGCCa -3'
miRNA:   3'- caCGCGUGGg---CGaacGGG--CACCACGG- -5'
29801 5' -61 NC_006273.1 + 46606 0.66 0.764591
Target:  5'- gGUGCGCAa-CGCUUuuaugaaggugaaGCCCGUGGc-CCa -3'
miRNA:   3'- -CACGCGUggGCGAA-------------CGGGCACCacGG- -5'
29801 5' -61 NC_006273.1 + 137254 0.67 0.756495
Target:  5'- --uCGCGCCCGCUUcCCCGgacGGUuucggcuuaGCCu -3'
miRNA:   3'- cacGCGUGGGCGAAcGGGCa--CCA---------CGG- -5'
29801 5' -61 NC_006273.1 + 81042 0.67 0.756495
Target:  5'- gGUG-GCGCUCGCUcaggcggaucUGCUCGUGcaGCCg -3'
miRNA:   3'- -CACgCGUGGGCGA----------ACGGGCACcaCGG- -5'
29801 5' -61 NC_006273.1 + 232935 0.67 0.756495
Target:  5'- -aGCGCGgCCGCUcccacUGCUCGcGGU-CCa -3'
miRNA:   3'- caCGCGUgGGCGA-----ACGGGCaCCAcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.