miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29801 5' -61 NC_006273.1 + 145392 1.09 0.001442
Target:  5'- gGUGCGCACCCGCUUGCCCGUGGUGCCc -3'
miRNA:   3'- -CACGCGUGGGCGAACGGGCACCACGG- -5'
29801 5' -61 NC_006273.1 + 205323 0.77 0.231039
Target:  5'- cGUGCGCAUCaaCGCaggccaggugUUGCCCGUGGUcugGCCg -3'
miRNA:   3'- -CACGCGUGG--GCG----------AACGGGCACCA---CGG- -5'
29801 5' -61 NC_006273.1 + 163175 0.76 0.253111
Target:  5'- aUGCGCGCUCGCUggUGgCCGUGGUcuGUCg -3'
miRNA:   3'- cACGCGUGGGCGA--ACgGGCACCA--CGG- -5'
29801 5' -61 NC_006273.1 + 179808 0.76 0.270781
Target:  5'- -cGCGCgACCUGCUgGCCCuGUGGcGCCu -3'
miRNA:   3'- caCGCG-UGGGCGAaCGGG-CACCaCGG- -5'
29801 5' -61 NC_006273.1 + 204903 0.75 0.309074
Target:  5'- cUGCGCGCCCGCgUGCUCGUGaaaacGCUg -3'
miRNA:   3'- cACGCGUGGGCGaACGGGCACca---CGG- -5'
29801 5' -61 NC_006273.1 + 132532 0.74 0.33682
Target:  5'- cGUGCcCACCCaacaGCgUGCCCGUGGacgcgGCCg -3'
miRNA:   3'- -CACGcGUGGG----CGaACGGGCACCa----CGG- -5'
29801 5' -61 NC_006273.1 + 140856 0.74 0.339692
Target:  5'- gGUGCGCGgCCGCUucucggggcgcgaggUGCCCGccUGGccgGCCu -3'
miRNA:   3'- -CACGCGUgGGCGA---------------ACGGGC--ACCa--CGG- -5'
29801 5' -61 NC_006273.1 + 177250 0.72 0.430504
Target:  5'- gGUGCGgaGgCCGCUgcgcgUGCCCGUGGUGa- -3'
miRNA:   3'- -CACGCg-UgGGCGA-----ACGGGCACCACgg -5'
29801 5' -61 NC_006273.1 + 216387 0.71 0.482721
Target:  5'- -aGCGCGCCCGUgggcaguagGUCCGUGcG-GCCc -3'
miRNA:   3'- caCGCGUGGGCGaa-------CGGGCAC-CaCGG- -5'
29801 5' -61 NC_006273.1 + 24584 0.71 0.482721
Target:  5'- cUGgGCGCCCGaggUGCUCcuccUGGUGCCu -3'
miRNA:   3'- cACgCGUGGGCga-ACGGGc---ACCACGG- -5'
29801 5' -61 NC_006273.1 + 71674 0.71 0.5008
Target:  5'- -cGCGCGCCUGC-UGCacaaUGUGGccGCCg -3'
miRNA:   3'- caCGCGUGGGCGaACGg---GCACCa-CGG- -5'
29801 5' -61 NC_006273.1 + 115446 0.71 0.509952
Target:  5'- uUGCGCugCCGCUggaccgcgUGCCCGUuagcGGacUGCa -3'
miRNA:   3'- cACGCGugGGCGA--------ACGGGCA----CC--ACGg -5'
29801 5' -61 NC_006273.1 + 13576 0.71 0.509952
Target:  5'- gGUGCuCACCCGCcgggcgGCCCG-GGccGCCg -3'
miRNA:   3'- -CACGcGUGGGCGaa----CGGGCaCCa-CGG- -5'
29801 5' -61 NC_006273.1 + 82938 0.71 0.519173
Target:  5'- cUGCGCggcaagcacAUCCGCUUGUaCGUGGcgGCCg -3'
miRNA:   3'- cACGCG---------UGGGCGAACGgGCACCa-CGG- -5'
29801 5' -61 NC_006273.1 + 130443 0.7 0.528458
Target:  5'- -gGCGC-UUCGCUUGCCCGagcagacgGuGUGCCa -3'
miRNA:   3'- caCGCGuGGGCGAACGGGCa-------C-CACGG- -5'
29801 5' -61 NC_006273.1 + 162012 0.7 0.528458
Target:  5'- -cGCGCGCuUUGCgacucuggGCCCGcUGGUGCUg -3'
miRNA:   3'- caCGCGUG-GGCGaa------CGGGC-ACCACGG- -5'
29801 5' -61 NC_006273.1 + 204726 0.7 0.537805
Target:  5'- -gGCGCGCCCGCUgcgaUCUGcGGUuGCCg -3'
miRNA:   3'- caCGCGUGGGCGAac--GGGCaCCA-CGG- -5'
29801 5' -61 NC_006273.1 + 142009 0.7 0.563308
Target:  5'- -cGCgGCuucggacaaggagaACCaGCgucgGCCCGUGGUGCCg -3'
miRNA:   3'- caCG-CG--------------UGGgCGaa--CGGGCACCACGG- -5'
29801 5' -61 NC_006273.1 + 141001 0.7 0.569975
Target:  5'- -gGcCGCGCCCGg-UGCCCGgcccacggccccggaUGGUGCUc -3'
miRNA:   3'- caC-GCGUGGGCgaACGGGC---------------ACCACGG- -5'
29801 5' -61 NC_006273.1 + 159102 0.7 0.575705
Target:  5'- -cGUGCuCUCGCUgaacccCCCGcUGGUGCCa -3'
miRNA:   3'- caCGCGuGGGCGAac----GGGC-ACCACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.