miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29801 5' -61 NC_006273.1 + 127750 0.67 0.756495
Target:  5'- gGUGCGCAgUUCGUggaagggGCCC--GGUGCCa -3'
miRNA:   3'- -CACGCGU-GGGCGaa-----CGGGcaCCACGG- -5'
29801 5' -61 NC_006273.1 + 38042 0.67 0.756495
Target:  5'- -aGCGCGgCCGCUcccacUGCUCGcGGU-CCa -3'
miRNA:   3'- caCGCGUgGGCGA-----ACGGGCaCCAcGG- -5'
29801 5' -61 NC_006273.1 + 163676 0.67 0.747406
Target:  5'- cUGCGCGCugguuaaacagaCCGCcUGCCaCGUcGGcgGCCa -3'
miRNA:   3'- cACGCGUG------------GGCGaACGG-GCA-CCa-CGG- -5'
29801 5' -61 NC_006273.1 + 148382 0.67 0.747406
Target:  5'- uUGCGCACCUGUcUGCgUcUGGUcacGCCu -3'
miRNA:   3'- cACGCGUGGGCGaACGgGcACCA---CGG- -5'
29801 5' -61 NC_006273.1 + 43280 0.67 0.738227
Target:  5'- -aGcCGCugCCGCU--CCCGuUGcGUGCCu -3'
miRNA:   3'- caC-GCGugGGCGAacGGGC-AC-CACGG- -5'
29801 5' -61 NC_006273.1 + 131831 0.67 0.738227
Target:  5'- -gGCGaccaGCCCGCacgGCCUG-GGgcugGCCg -3'
miRNA:   3'- caCGCg---UGGGCGaa-CGGGCaCCa---CGG- -5'
29801 5' -61 NC_006273.1 + 97214 0.67 0.737305
Target:  5'- -aGCuGCaACCCGCcUGCCCGcaggccgUGGccGCCg -3'
miRNA:   3'- caCG-CG-UGGGCGaACGGGC-------ACCa-CGG- -5'
29801 5' -61 NC_006273.1 + 134027 0.67 0.728966
Target:  5'- aUGCGCACggCCGCc-GCCUGguUGGUGUUg -3'
miRNA:   3'- cACGCGUG--GGCGaaCGGGC--ACCACGG- -5'
29801 5' -61 NC_006273.1 + 118161 0.67 0.728966
Target:  5'- -cGCGCGCCCcaGCc-GCCggCGUGGcgGCCu -3'
miRNA:   3'- caCGCGUGGG--CGaaCGG--GCACCa-CGG- -5'
29801 5' -61 NC_006273.1 + 198606 0.67 0.728966
Target:  5'- cUGCGCGCguCUGCaaccuaacgUGCCCuUGGUGCa -3'
miRNA:   3'- cACGCGUG--GGCGa--------ACGGGcACCACGg -5'
29801 5' -61 NC_006273.1 + 90941 0.67 0.727104
Target:  5'- -cGCGCACcgccucgCCGCcgUGCagucgcaCCGUGGUcGCCu -3'
miRNA:   3'- caCGCGUG-------GGCGa-ACG-------GGCACCA-CGG- -5'
29801 5' -61 NC_006273.1 + 232890 0.67 0.71963
Target:  5'- -cGCGCGCCCacaGCgcgGCgCGcgGGUGCa -3'
miRNA:   3'- caCGCGUGGG---CGaa-CGgGCa-CCACGg -5'
29801 5' -61 NC_006273.1 + 24682 0.67 0.71963
Target:  5'- -cGCGCugCCGUc-GUCCGUuccgacagcuGGUGCUa -3'
miRNA:   3'- caCGCGugGGCGaaCGGGCA----------CCACGG- -5'
29801 5' -61 NC_006273.1 + 37997 0.67 0.71963
Target:  5'- -cGCGCGCCCacaGCgcgGCgCGcgGGUGCa -3'
miRNA:   3'- caCGCGUGGG---CGaa-CGgGCa-CCACGg -5'
29801 5' -61 NC_006273.1 + 149906 0.67 0.710227
Target:  5'- uUGCGCGCCCuuccacgGCgUGUGG-GCCg -3'
miRNA:   3'- cACGCGUGGGcgaa---CGgGCACCaCGG- -5'
29801 5' -61 NC_006273.1 + 199940 0.68 0.704556
Target:  5'- -gGCuCGCCCGCUUguacuuucacuuucgGCUCGUGGaacgugGCCg -3'
miRNA:   3'- caCGcGUGGGCGAA---------------CGGGCACCa-----CGG- -5'
29801 5' -61 NC_006273.1 + 200643 0.68 0.700765
Target:  5'- uGUGCGCGCCggccuguuguguCGCacGCCCGaggaucUGGcgGCCg -3'
miRNA:   3'- -CACGCGUGG------------GCGaaCGGGC------ACCa-CGG- -5'
29801 5' -61 NC_006273.1 + 122770 0.68 0.700765
Target:  5'- -aGCGCGuCCCGUggGaaCGUGGcGCCg -3'
miRNA:   3'- caCGCGU-GGGCGaaCggGCACCaCGG- -5'
29801 5' -61 NC_006273.1 + 144910 0.68 0.700765
Target:  5'- -cGCGCGCCCGCUcaagccGCCCGaaccGCUg -3'
miRNA:   3'- caCGCGUGGGCGAa-----CGGGCaccaCGG- -5'
29801 5' -61 NC_006273.1 + 89566 0.68 0.691251
Target:  5'- -aGCGCACCgCGUUUuucuugggGCCguCGUGGgugGCCu -3'
miRNA:   3'- caCGCGUGG-GCGAA--------CGG--GCACCa--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.