miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29801 5' -61 NC_006273.1 + 2258 0.68 0.652831
Target:  5'- -cGCGCGCCaUGC-UGgUgGUGGUGCUg -3'
miRNA:   3'- caCGCGUGG-GCGaACgGgCACCACGG- -5'
29801 5' -61 NC_006273.1 + 13187 0.66 0.8087
Target:  5'- -cGCGaacaaacaGCCCGCUacggGCCCGUGcG-GCg -3'
miRNA:   3'- caCGCg-------UGGGCGAa---CGGGCAC-CaCGg -5'
29801 5' -61 NC_006273.1 + 13576 0.71 0.509952
Target:  5'- gGUGCuCACCCGCcgggcgGCCCG-GGccGCCg -3'
miRNA:   3'- -CACGcGUGGGCGaa----CGGGCaCCa-CGG- -5'
29801 5' -61 NC_006273.1 + 14355 0.66 0.773487
Target:  5'- uGUGCcgccggaGCucCCCGCgcUGCCUGUGGcgGCUg -3'
miRNA:   3'- -CACG-------CGu-GGGCGa-ACGGGCACCa-CGG- -5'
29801 5' -61 NC_006273.1 + 16593 0.68 0.681693
Target:  5'- -aGCGCcagccGCCCGCUUGgCCGa-GUGCg -3'
miRNA:   3'- caCGCG-----UGGGCGAACgGGCacCACGg -5'
29801 5' -61 NC_006273.1 + 16642 0.7 0.583364
Target:  5'- cUGCGUugCCGCUgguaccugcuggGCgCCGUGG-GCUc -3'
miRNA:   3'- cACGCGugGGCGAa-----------CG-GGCACCaCGG- -5'
29801 5' -61 NC_006273.1 + 24584 0.71 0.482721
Target:  5'- cUGgGCGCCCGaggUGCUCcuccUGGUGCCu -3'
miRNA:   3'- cACgCGUGGGCga-ACGGGc---ACCACGG- -5'
29801 5' -61 NC_006273.1 + 24682 0.67 0.71963
Target:  5'- -cGCGCugCCGUc-GUCCGUuccgacagcuGGUGCUa -3'
miRNA:   3'- caCGCGugGGCGaaCGGGCA----------CCACGG- -5'
29801 5' -61 NC_006273.1 + 30744 0.68 0.681693
Target:  5'- aGUGUGCcCUCGC-UGCCCGagaacGGcGCCg -3'
miRNA:   3'- -CACGCGuGGGCGaACGGGCa----CCaCGG- -5'
29801 5' -61 NC_006273.1 + 31887 0.66 0.765486
Target:  5'- -cGUGCACCaaauGCaaaCCCauGUGGUGCCa -3'
miRNA:   3'- caCGCGUGGg---CGaacGGG--CACCACGG- -5'
29801 5' -61 NC_006273.1 + 32856 0.68 0.649935
Target:  5'- cUGCGguCCCaacugaaaagguugGCgaGUCCGaUGGUGCCg -3'
miRNA:   3'- cACGCguGGG--------------CGaaCGGGC-ACCACGG- -5'
29801 5' -61 NC_006273.1 + 34399 0.68 0.662476
Target:  5'- cGUGCaCACCaCGUaUUGcCCCGUGGccacgGCCa -3'
miRNA:   3'- -CACGcGUGG-GCG-AAC-GGGCACCa----CGG- -5'
29801 5' -61 NC_006273.1 + 35715 0.66 0.766379
Target:  5'- -gGCGUGCCCGU--GCCCGgagacccagaucucgGGcGCCg -3'
miRNA:   3'- caCGCGUGGGCGaaCGGGCa--------------CCaCGG- -5'
29801 5' -61 NC_006273.1 + 37997 0.67 0.71963
Target:  5'- -cGCGCGCCCacaGCgcgGCgCGcgGGUGCa -3'
miRNA:   3'- caCGCGUGGG---CGaa-CGgGCa-CCACGg -5'
29801 5' -61 NC_006273.1 + 38042 0.67 0.756495
Target:  5'- -aGCGCGgCCGCUcccacUGCUCGcGGU-CCa -3'
miRNA:   3'- caCGCGUgGGCGA-----ACGGGCaCCAcGG- -5'
29801 5' -61 NC_006273.1 + 43280 0.67 0.738227
Target:  5'- -aGcCGCugCCGCU--CCCGuUGcGUGCCu -3'
miRNA:   3'- caC-GCGugGGCGAacGGGC-AC-CACGG- -5'
29801 5' -61 NC_006273.1 + 46606 0.66 0.764591
Target:  5'- gGUGCGCAa-CGCUUuuaugaaggugaaGCCCGUGGc-CCa -3'
miRNA:   3'- -CACGCGUggGCGAA-------------CGGGCACCacGG- -5'
29801 5' -61 NC_006273.1 + 67967 0.66 0.8087
Target:  5'- -aGCGCGCCCGCca--CUGUGGaagucUGUCu -3'
miRNA:   3'- caCGCGUGGGCGaacgGGCACC-----ACGG- -5'
29801 5' -61 NC_006273.1 + 68542 0.66 0.77437
Target:  5'- --cUGCAUCCGU---CCgGUGGUGCCg -3'
miRNA:   3'- cacGCGUGGGCGaacGGgCACCACGG- -5'
29801 5' -61 NC_006273.1 + 70956 0.68 0.662476
Target:  5'- -cGUGCugCUGCUcaauaccgUGUucaCCGUGGUGCa -3'
miRNA:   3'- caCGCGugGGCGA--------ACG---GGCACCACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.