miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29801 5' -61 NC_006273.1 + 90941 0.67 0.727104
Target:  5'- -cGCGCACcgccucgCCGCcgUGCagucgcaCCGUGGUcGCCu -3'
miRNA:   3'- caCGCGUG-------GGCGa-ACG-------GGCACCA-CGG- -5'
29801 5' -61 NC_006273.1 + 30744 0.68 0.681693
Target:  5'- aGUGUGCcCUCGC-UGCCCGagaacGGcGCCg -3'
miRNA:   3'- -CACGCGuGGGCGaACGGGCa----CCaCGG- -5'
29801 5' -61 NC_006273.1 + 103480 0.68 0.681693
Target:  5'- -gGCGCGCCaGC-UGCgUGgaGGUGCCg -3'
miRNA:   3'- caCGCGUGGgCGaACGgGCa-CCACGG- -5'
29801 5' -61 NC_006273.1 + 188187 0.68 0.690297
Target:  5'- -gGCuCGCCgucUGCUUcucugccGCUCGUGGUGCCg -3'
miRNA:   3'- caCGcGUGG---GCGAA-------CGGGCACCACGG- -5'
29801 5' -61 NC_006273.1 + 150753 0.68 0.691251
Target:  5'- -aGCGCGCugcagaucagCCGCcggGCgCUGUGGUGCa -3'
miRNA:   3'- caCGCGUG----------GGCGaa-CG-GGCACCACGg -5'
29801 5' -61 NC_006273.1 + 122770 0.68 0.700765
Target:  5'- -aGCGCGuCCCGUggGaaCGUGGcGCCg -3'
miRNA:   3'- caCGCGU-GGGCGaaCggGCACCaCGG- -5'
29801 5' -61 NC_006273.1 + 144910 0.68 0.700765
Target:  5'- -cGCGCGCCCGCUcaagccGCCCGaaccGCUg -3'
miRNA:   3'- caCGCGUGGGCGAa-----CGGGCaccaCGG- -5'
29801 5' -61 NC_006273.1 + 149906 0.67 0.710227
Target:  5'- uUGCGCGCCCuuccacgGCgUGUGG-GCCg -3'
miRNA:   3'- cACGCGUGGGcgaa---CGgGCACCaCGG- -5'
29801 5' -61 NC_006273.1 + 232890 0.67 0.71963
Target:  5'- -cGCGCGCCCacaGCgcgGCgCGcgGGUGCa -3'
miRNA:   3'- caCGCGUGGG---CGaa-CGgGCa-CCACGg -5'
29801 5' -61 NC_006273.1 + 81729 0.68 0.6721
Target:  5'- uGUG-GCGgCCGCUUGCCCGagcccugcgcGGaGCCg -3'
miRNA:   3'- -CACgCGUgGGCGAACGGGCa---------CCaCGG- -5'
29801 5' -61 NC_006273.1 + 227276 0.68 0.6721
Target:  5'- cGUGCGuCACCCGC-UGCUuuucuggcgacgCGUGGcguuaucGCCg -3'
miRNA:   3'- -CACGC-GUGGGCGaACGG------------GCACCa------CGG- -5'
29801 5' -61 NC_006273.1 + 34399 0.68 0.662476
Target:  5'- cGUGCaCACCaCGUaUUGcCCCGUGGccacgGCCa -3'
miRNA:   3'- -CACGcGUGG-GCG-AAC-GGGCACCa----CGG- -5'
29801 5' -61 NC_006273.1 + 216387 0.71 0.482721
Target:  5'- -aGCGCGCCCGUgggcaguagGUCCGUGcG-GCCc -3'
miRNA:   3'- caCGCGUGGGCGaa-------CGGGCAC-CaCGG- -5'
29801 5' -61 NC_006273.1 + 71674 0.71 0.5008
Target:  5'- -cGCGCGCCUGC-UGCacaaUGUGGccGCCg -3'
miRNA:   3'- caCGCGUGGGCGaACGg---GCACCa-CGG- -5'
29801 5' -61 NC_006273.1 + 130443 0.7 0.528458
Target:  5'- -gGCGC-UUCGCUUGCCCGagcagacgGuGUGCCa -3'
miRNA:   3'- caCGCGuGGGCGAACGGGCa-------C-CACGG- -5'
29801 5' -61 NC_006273.1 + 142009 0.7 0.563308
Target:  5'- -cGCgGCuucggacaaggagaACCaGCgucgGCCCGUGGUGCCg -3'
miRNA:   3'- caCG-CG--------------UGGgCGaa--CGGGCACCACGG- -5'
29801 5' -61 NC_006273.1 + 229425 0.69 0.593928
Target:  5'- -gGCGUcguguaauccacgACUCGCacgGCCUGUGGUGCg -3'
miRNA:   3'- caCGCG-------------UGGGCGaa-CGGGCACCACGg -5'
29801 5' -61 NC_006273.1 + 190885 0.69 0.632537
Target:  5'- cGUGCGCGCgugugucucaccgCCGCUcGCCCGU--UGUCg -3'
miRNA:   3'- -CACGCGUG-------------GGCGAaCGGGCAccACGG- -5'
29801 5' -61 NC_006273.1 + 32856 0.68 0.649935
Target:  5'- cUGCGguCCCaacugaaaagguugGCgaGUCCGaUGGUGCCg -3'
miRNA:   3'- cACGCguGGG--------------CGaaCGGGC-ACCACGG- -5'
29801 5' -61 NC_006273.1 + 197151 0.68 0.652831
Target:  5'- -cGCGCGCCaUGC-UGgUgGUGGUGCUg -3'
miRNA:   3'- caCGCGUGG-GCGaACgGgCACCACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.