miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29803 3' -53.4 NC_006273.1 + 190044 0.66 0.991856
Target:  5'- ---aGUUCgGCCgGCGCGCGcuugagcUGUGCGa -3'
miRNA:   3'- gacaUAAGaUGG-CGCGCGC-------ACACGCg -5'
29803 3' -53.4 NC_006273.1 + 216373 0.66 0.990842
Target:  5'- uCUGguugUCUugCaGCGCGCccGUGgGCa -3'
miRNA:   3'- -GACaua-AGAugG-CGCGCGcaCACgCG- -5'
29803 3' -53.4 NC_006273.1 + 196207 0.66 0.990842
Target:  5'- ---gAUUCUA-CGCGCGgGUGacgccGCGCa -3'
miRNA:   3'- gacaUAAGAUgGCGCGCgCACa----CGCG- -5'
29803 3' -53.4 NC_006273.1 + 140496 0.66 0.990842
Target:  5'- aCUGUGg---ACCGCGCaGCuuuUGCGCg -3'
miRNA:   3'- -GACAUaagaUGGCGCG-CGcacACGCG- -5'
29803 3' -53.4 NC_006273.1 + 83642 0.66 0.990842
Target:  5'- -cGUGUUggagGCCGUGCGCaag-GCGCg -3'
miRNA:   3'- gaCAUAAga--UGGCGCGCGcacaCGCG- -5'
29803 3' -53.4 NC_006273.1 + 1314 0.66 0.990842
Target:  5'- ---gAUUCUA-CGCGCGgGUGacgccGCGCa -3'
miRNA:   3'- gacaUAAGAUgGCGCGCgCACa----CGCG- -5'
29803 3' -53.4 NC_006273.1 + 63745 0.66 0.990842
Target:  5'- uCUGU-UUCgguCUG-GCGCGUGgccggGCGCg -3'
miRNA:   3'- -GACAuAAGau-GGCgCGCGCACa----CGCG- -5'
29803 3' -53.4 NC_006273.1 + 18787 0.66 0.989602
Target:  5'- -cGUGgucUCUGCCGCuucgacCGCGgauUGCGCg -3'
miRNA:   3'- gaCAUa--AGAUGGCGc-----GCGCac-ACGCG- -5'
29803 3' -53.4 NC_006273.1 + 178969 0.66 0.989602
Target:  5'- -cGUGg---GCCGCGUGCcugggaacGUGCGCa -3'
miRNA:   3'- gaCAUaagaUGGCGCGCGca------CACGCG- -5'
29803 3' -53.4 NC_006273.1 + 156701 0.66 0.988234
Target:  5'- uCUGUAc-CUgcACCGUGUGCGUGUugaggaccugGUGCu -3'
miRNA:   3'- -GACAUaaGA--UGGCGCGCGCACA----------CGCG- -5'
29803 3' -53.4 NC_006273.1 + 103226 0.66 0.988234
Target:  5'- -gGUGgaUC-ACUuCGCGCGUGUGCGg -3'
miRNA:   3'- gaCAUa-AGaUGGcGCGCGCACACGCg -5'
29803 3' -53.4 NC_006273.1 + 232009 0.66 0.988234
Target:  5'- -aGUAcaggCUACCGCGUG-GUGUuGUGUa -3'
miRNA:   3'- gaCAUaa--GAUGGCGCGCgCACA-CGCG- -5'
29803 3' -53.4 NC_006273.1 + 77006 0.66 0.986731
Target:  5'- -aGUAUgUCUAgCGUGaGCGgcGUGCGCa -3'
miRNA:   3'- gaCAUA-AGAUgGCGCgCGCa-CACGCG- -5'
29803 3' -53.4 NC_006273.1 + 94053 0.67 0.985084
Target:  5'- -gGUAaauUUCcACUGgaUGCGCGUcGUGCGCa -3'
miRNA:   3'- gaCAU---AAGaUGGC--GCGCGCA-CACGCG- -5'
29803 3' -53.4 NC_006273.1 + 127495 0.67 0.982523
Target:  5'- -gGUGUUCggcgaucaacgucACCaGCGCGUagcUGUGCGCa -3'
miRNA:   3'- gaCAUAAGa------------UGG-CGCGCGc--ACACGCG- -5'
29803 3' -53.4 NC_006273.1 + 125788 0.67 0.981329
Target:  5'- uUGUGUgugGCCGCGaaaGUcUGUGCGUc -3'
miRNA:   3'- gACAUAagaUGGCGCg--CGcACACGCG- -5'
29803 3' -53.4 NC_006273.1 + 82108 0.67 0.979205
Target:  5'- uCUGUaccGUUCUGCUGCGCuCGcUGcucUGCGUc -3'
miRNA:   3'- -GACA---UAAGAUGGCGCGcGC-AC---ACGCG- -5'
29803 3' -53.4 NC_006273.1 + 188150 0.67 0.979205
Target:  5'- -----gUCUGCCGCGUuucgggggcuuGCGUGUaacaaaaguaaaGCGCg -3'
miRNA:   3'- gacauaAGAUGGCGCG-----------CGCACA------------CGCG- -5'
29803 3' -53.4 NC_006273.1 + 233836 0.67 0.979205
Target:  5'- uUGUGUUUgACCguagagguguugGCGgGCcUGUGCGCa -3'
miRNA:   3'- gACAUAAGaUGG------------CGCgCGcACACGCG- -5'
29803 3' -53.4 NC_006273.1 + 159231 0.67 0.979205
Target:  5'- -cGUGgauaacgcgUCUAgUCGCGCGaacuuaGUGUGCGUa -3'
miRNA:   3'- gaCAUa--------AGAU-GGCGCGCg-----CACACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.