Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29803 | 3' | -53.4 | NC_006273.1 | + | 142423 | 1.13 | 0.004782 |
Target: 5'- gCUGUAUUCUACCGCGCGCGUGUGCGCg -3' miRNA: 3'- -GACAUAAGAUGGCGCGCGCACACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 176270 | 0.77 | 0.585322 |
Target: 5'- -cGUGUUaaugaagcgCUACCGUGCGCGUGagcaGCGCu -3' miRNA: 3'- gaCAUAA---------GAUGGCGCGCGCACa---CGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 197242 | 0.75 | 0.705795 |
Target: 5'- gCUGUcgcacuUUCUGCgCGCGgGCGUGcuggGCGCg -3' miRNA: 3'- -GACAu-----AAGAUG-GCGCgCGCACa---CGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 2349 | 0.75 | 0.705795 |
Target: 5'- gCUGUcgcacuUUCUGCgCGCGgGCGUGcuggGCGCg -3' miRNA: 3'- -GACAu-----AAGAUG-GCGCgCGCACa---CGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 124430 | 0.73 | 0.817413 |
Target: 5'- -cGUGcugCgGCCGCGCGgGcGUGCGCg -3' miRNA: 3'- gaCAUaa-GaUGGCGCGCgCaCACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 142450 | 0.72 | 0.834113 |
Target: 5'- ----------gCGUGCGCGUGUGCGCa -3' miRNA: 3'- gacauaagaugGCGCGCGCACACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 192728 | 0.72 | 0.834113 |
Target: 5'- uCUGg---CUGCUGC-UGCGUGUGUGCu -3' miRNA: 3'- -GACauaaGAUGGCGcGCGCACACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 111954 | 0.72 | 0.865317 |
Target: 5'- uCUGcg-UCUGCCGCGCG-GUG-GCGg -3' miRNA: 3'- -GACauaAGAUGGCGCGCgCACaCGCg -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 45455 | 0.72 | 0.865317 |
Target: 5'- gCUGcagacgGCUGUgucGCGCGUGUGCGCg -3' miRNA: 3'- -GACauaagaUGGCG---CGCGCACACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 196694 | 0.7 | 0.911904 |
Target: 5'- aUGgug-CUGCUGgGCGCGUGgcaggagcugGCGCa -3' miRNA: 3'- gACauaaGAUGGCgCGCGCACa---------CGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 147857 | 0.7 | 0.911904 |
Target: 5'- -gGUGaccgUCUGCCGCcggcugagGUGCGUGcUGUGCa -3' miRNA: 3'- gaCAUa---AGAUGGCG--------CGCGCAC-ACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 1802 | 0.7 | 0.911904 |
Target: 5'- aUGgug-CUGCUGgGCGCGUGgcaggagcugGCGCa -3' miRNA: 3'- gACauaaGAUGGCgCGCGCACa---------CGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 194968 | 0.7 | 0.917661 |
Target: 5'- gUGUGUcagggUgUGCCGCGgGUGUGU-CGCg -3' miRNA: 3'- gACAUA-----AgAUGGCGCgCGCACAcGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 234906 | 0.7 | 0.917661 |
Target: 5'- gUGUGUcagggUgUGCCGCGgGUGUGU-CGCg -3' miRNA: 3'- gACAUA-----AgAUGGCGCgCGCACAcGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 75 | 0.7 | 0.917661 |
Target: 5'- gUGUGUcagggUgUGCCGCGgGUGUGU-CGCg -3' miRNA: 3'- gACAUA-----AgAUGGCGCgCGCACAcGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 103765 | 0.7 | 0.923186 |
Target: 5'- -gGUAcUCgagcaACCGCGCGCGUGccaggccGUGCg -3' miRNA: 3'- gaCAUaAGa----UGGCGCGCGCACa------CGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 62669 | 0.69 | 0.938366 |
Target: 5'- ----------aCGCGCGCGUGUGCGa -3' miRNA: 3'- gacauaagaugGCGCGCGCACACGCg -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 44218 | 0.69 | 0.942963 |
Target: 5'- aUGggggUUACCGUGauCGCGUcGUGCGCg -3' miRNA: 3'- gACauaaGAUGGCGC--GCGCA-CACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 174105 | 0.69 | 0.947331 |
Target: 5'- -cGUGUacacggccUCgGCCGCGCGCGcc-GCGCu -3' miRNA: 3'- gaCAUA--------AGaUGGCGCGCGCacaCGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 58680 | 0.68 | 0.959086 |
Target: 5'- uUGUGgcugCUauugggucacaGCCGCGUGCcgcggGUGCGCg -3' miRNA: 3'- gACAUaa--GA-----------UGGCGCGCGca---CACGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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