Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29803 | 3' | -53.4 | NC_006273.1 | + | 83642 | 0.66 | 0.990842 |
Target: 5'- -cGUGUUggagGCCGUGCGCaag-GCGCg -3' miRNA: 3'- gaCAUAAga--UGGCGCGCGcacaCGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 140496 | 0.66 | 0.990842 |
Target: 5'- aCUGUGg---ACCGCGCaGCuuuUGCGCg -3' miRNA: 3'- -GACAUaagaUGGCGCG-CGcacACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 196207 | 0.66 | 0.990842 |
Target: 5'- ---gAUUCUA-CGCGCGgGUGacgccGCGCa -3' miRNA: 3'- gacaUAAGAUgGCGCGCgCACa----CGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 63745 | 0.66 | 0.990842 |
Target: 5'- uCUGU-UUCgguCUG-GCGCGUGgccggGCGCg -3' miRNA: 3'- -GACAuAAGau-GGCgCGCGCACa----CGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 216373 | 0.66 | 0.990842 |
Target: 5'- uCUGguugUCUugCaGCGCGCccGUGgGCa -3' miRNA: 3'- -GACaua-AGAugG-CGCGCGcaCACgCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 190044 | 0.66 | 0.991856 |
Target: 5'- ---aGUUCgGCCgGCGCGCGcuugagcUGUGCGa -3' miRNA: 3'- gacaUAAGaUGG-CGCGCGC-------ACACGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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