miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29803 3' -53.4 NC_006273.1 + 75 0.7 0.917661
Target:  5'- gUGUGUcagggUgUGCCGCGgGUGUGU-CGCg -3'
miRNA:   3'- gACAUA-----AgAUGGCGCgCGCACAcGCG- -5'
29803 3' -53.4 NC_006273.1 + 641 0.67 0.974428
Target:  5'- uCUGcgcgCUGCCG-GUGCGUGUG-GCu -3'
miRNA:   3'- -GACauaaGAUGGCgCGCGCACACgCG- -5'
29803 3' -53.4 NC_006273.1 + 1314 0.66 0.990842
Target:  5'- ---gAUUCUA-CGCGCGgGUGacgccGCGCa -3'
miRNA:   3'- gacaUAAGAUgGCGCGCgCACa----CGCG- -5'
29803 3' -53.4 NC_006273.1 + 1802 0.7 0.911904
Target:  5'- aUGgug-CUGCUGgGCGCGUGgcaggagcugGCGCa -3'
miRNA:   3'- gACauaaGAUGGCgCGCGCACa---------CGCG- -5'
29803 3' -53.4 NC_006273.1 + 2349 0.75 0.705795
Target:  5'- gCUGUcgcacuUUCUGCgCGCGgGCGUGcuggGCGCg -3'
miRNA:   3'- -GACAu-----AAGAUG-GCGCgCGCACa---CGCG- -5'
29803 3' -53.4 NC_006273.1 + 18787 0.66 0.989602
Target:  5'- -cGUGgucUCUGCCGCuucgacCGCGgauUGCGCg -3'
miRNA:   3'- gaCAUa--AGAUGGCGc-----GCGCac-ACGCG- -5'
29803 3' -53.4 NC_006273.1 + 40579 0.67 0.974428
Target:  5'- uCUGcgcgCUGCCG-GUGCGUGUG-GCu -3'
miRNA:   3'- -GACauaaGAUGGCgCGCGCACACgCG- -5'
29803 3' -53.4 NC_006273.1 + 43140 0.68 0.968898
Target:  5'- gUGUGguaUACCGCGUuaggcaccGCGUG-GCGUa -3'
miRNA:   3'- gACAUaagAUGGCGCG--------CGCACaCGCG- -5'
29803 3' -53.4 NC_006273.1 + 44218 0.69 0.942963
Target:  5'- aUGggggUUACCGUGauCGCGUcGUGCGCg -3'
miRNA:   3'- gACauaaGAUGGCGC--GCGCA-CACGCG- -5'
29803 3' -53.4 NC_006273.1 + 45455 0.72 0.865317
Target:  5'- gCUGcagacgGCUGUgucGCGCGUGUGCGCg -3'
miRNA:   3'- -GACauaagaUGGCG---CGCGCACACGCG- -5'
29803 3' -53.4 NC_006273.1 + 58680 0.68 0.959086
Target:  5'- uUGUGgcugCUauugggucacaGCCGCGUGCcgcggGUGCGCg -3'
miRNA:   3'- gACAUaa--GA-----------UGGCGCGCGca---CACGCG- -5'
29803 3' -53.4 NC_006273.1 + 62669 0.69 0.938366
Target:  5'- ----------aCGCGCGCGUGUGCGa -3'
miRNA:   3'- gacauaagaugGCGCGCGCACACGCg -5'
29803 3' -53.4 NC_006273.1 + 63745 0.66 0.990842
Target:  5'- uCUGU-UUCgguCUG-GCGCGUGgccggGCGCg -3'
miRNA:   3'- -GACAuAAGau-GGCgCGCGCACa----CGCG- -5'
29803 3' -53.4 NC_006273.1 + 77006 0.66 0.986731
Target:  5'- -aGUAUgUCUAgCGUGaGCGgcGUGCGCa -3'
miRNA:   3'- gaCAUA-AGAUgGCGCgCGCa-CACGCG- -5'
29803 3' -53.4 NC_006273.1 + 82108 0.67 0.979205
Target:  5'- uCUGUaccGUUCUGCUGCGCuCGcUGcucUGCGUc -3'
miRNA:   3'- -GACA---UAAGAUGGCGCGcGC-AC---ACGCG- -5'
29803 3' -53.4 NC_006273.1 + 83642 0.66 0.990842
Target:  5'- -cGUGUUggagGCCGUGCGCaag-GCGCg -3'
miRNA:   3'- gaCAUAAga--UGGCGCGCGcacaCGCG- -5'
29803 3' -53.4 NC_006273.1 + 94053 0.67 0.985084
Target:  5'- -gGUAaauUUCcACUGgaUGCGCGUcGUGCGCa -3'
miRNA:   3'- gaCAU---AAGaUGGC--GCGCGCA-CACGCG- -5'
29803 3' -53.4 NC_006273.1 + 103226 0.66 0.988234
Target:  5'- -gGUGgaUC-ACUuCGCGCGUGUGCGg -3'
miRNA:   3'- gaCAUa-AGaUGGcGCGCGCACACGCg -5'
29803 3' -53.4 NC_006273.1 + 103765 0.7 0.923186
Target:  5'- -gGUAcUCgagcaACCGCGCGCGUGccaggccGUGCg -3'
miRNA:   3'- gaCAUaAGa----UGGCGCGCGCACa------CGCG- -5'
29803 3' -53.4 NC_006273.1 + 111954 0.72 0.865317
Target:  5'- uCUGcg-UCUGCCGCGCG-GUG-GCGg -3'
miRNA:   3'- -GACauaAGAUGGCGCGCgCACaCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.