Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29803 | 3' | -53.4 | NC_006273.1 | + | 234906 | 0.7 | 0.917661 |
Target: 5'- gUGUGUcagggUgUGCCGCGgGUGUGU-CGCg -3' miRNA: 3'- gACAUA-----AgAUGGCGCgCGCACAcGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 233836 | 0.67 | 0.979205 |
Target: 5'- uUGUGUUUgACCguagagguguugGCGgGCcUGUGCGCa -3' miRNA: 3'- gACAUAAGaUGG------------CGCgCGcACACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 232009 | 0.66 | 0.988234 |
Target: 5'- -aGUAcaggCUACCGCGUG-GUGUuGUGUa -3' miRNA: 3'- gaCAUaa--GAUGGCGCGCgCACA-CGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 216373 | 0.66 | 0.990842 |
Target: 5'- uCUGguugUCUugCaGCGCGCccGUGgGCa -3' miRNA: 3'- -GACaua-AGAugG-CGCGCGcaCACgCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 201895 | 0.68 | 0.968898 |
Target: 5'- ------aCUACCGCaGCGUGUcGcUGCGCa -3' miRNA: 3'- gacauaaGAUGGCG-CGCGCA-C-ACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 197750 | 0.67 | 0.974428 |
Target: 5'- -cGUGccUUUUGCCGCGCGgGUc-GCGUg -3' miRNA: 3'- gaCAU--AAGAUGGCGCGCgCAcaCGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 197242 | 0.75 | 0.705795 |
Target: 5'- gCUGUcgcacuUUCUGCgCGCGgGCGUGcuggGCGCg -3' miRNA: 3'- -GACAu-----AAGAUG-GCGCgCGCACa---CGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 196694 | 0.7 | 0.911904 |
Target: 5'- aUGgug-CUGCUGgGCGCGUGgcaggagcugGCGCa -3' miRNA: 3'- gACauaaGAUGGCgCGCGCACa---------CGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 196207 | 0.66 | 0.990842 |
Target: 5'- ---gAUUCUA-CGCGCGgGUGacgccGCGCa -3' miRNA: 3'- gacaUAAGAUgGCGCGCgCACa----CGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 194968 | 0.7 | 0.917661 |
Target: 5'- gUGUGUcagggUgUGCCGCGgGUGUGU-CGCg -3' miRNA: 3'- gACAUA-----AgAUGGCGCgCGCACAcGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 192728 | 0.72 | 0.834113 |
Target: 5'- uCUGg---CUGCUGC-UGCGUGUGUGCu -3' miRNA: 3'- -GACauaaGAUGGCGcGCGCACACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 190044 | 0.66 | 0.991856 |
Target: 5'- ---aGUUCgGCCgGCGCGCGcuugagcUGUGCGa -3' miRNA: 3'- gacaUAAGaUGG-CGCGCGC-------ACACGCg -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 188150 | 0.67 | 0.979205 |
Target: 5'- -----gUCUGCCGCGUuucgggggcuuGCGUGUaacaaaaguaaaGCGCg -3' miRNA: 3'- gacauaAGAUGGCGCG-----------CGCACA------------CGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 178969 | 0.66 | 0.989602 |
Target: 5'- -cGUGg---GCCGCGUGCcugggaacGUGCGCa -3' miRNA: 3'- gaCAUaagaUGGCGCGCGca------CACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 176270 | 0.77 | 0.585322 |
Target: 5'- -cGUGUUaaugaagcgCUACCGUGCGCGUGagcaGCGCu -3' miRNA: 3'- gaCAUAA---------GAUGGCGCGCGCACa---CGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 174105 | 0.69 | 0.947331 |
Target: 5'- -cGUGUacacggccUCgGCCGCGCGCGcc-GCGCu -3' miRNA: 3'- gaCAUA--------AGaUGGCGCGCGCacaCGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 159231 | 0.67 | 0.979205 |
Target: 5'- -cGUGgauaacgcgUCUAgUCGCGCGaacuuaGUGUGCGUa -3' miRNA: 3'- gaCAUa--------AGAU-GGCGCGCg-----CACACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 156701 | 0.66 | 0.988234 |
Target: 5'- uCUGUAc-CUgcACCGUGUGCGUGUugaggaccugGUGCu -3' miRNA: 3'- -GACAUaaGA--UGGCGCGCGCACA----------CGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 147857 | 0.7 | 0.911904 |
Target: 5'- -gGUGaccgUCUGCCGCcggcugagGUGCGUGcUGUGCa -3' miRNA: 3'- gaCAUa---AGAUGGCG--------CGCGCAC-ACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 142450 | 0.72 | 0.834113 |
Target: 5'- ----------gCGUGCGCGUGUGCGCa -3' miRNA: 3'- gacauaagaugGCGCGCGCACACGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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