Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29803 | 3' | -53.4 | NC_006273.1 | + | 63745 | 0.66 | 0.990842 |
Target: 5'- uCUGU-UUCgguCUG-GCGCGUGgccggGCGCg -3' miRNA: 3'- -GACAuAAGau-GGCgCGCGCACa----CGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 125788 | 0.67 | 0.981329 |
Target: 5'- uUGUGUgugGCCGCGaaaGUcUGUGCGUc -3' miRNA: 3'- gACAUAagaUGGCGCg--CGcACACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 127495 | 0.67 | 0.982523 |
Target: 5'- -gGUGUUCggcgaucaacgucACCaGCGCGUagcUGUGCGCa -3' miRNA: 3'- gaCAUAAGa------------UGG-CGCGCGc--ACACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 94053 | 0.67 | 0.985084 |
Target: 5'- -gGUAaauUUCcACUGgaUGCGCGUcGUGCGCa -3' miRNA: 3'- gaCAU---AAGaUGGC--GCGCGCA-CACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 77006 | 0.66 | 0.986731 |
Target: 5'- -aGUAUgUCUAgCGUGaGCGgcGUGCGCa -3' miRNA: 3'- gaCAUA-AGAUgGCGCgCGCa-CACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 232009 | 0.66 | 0.988234 |
Target: 5'- -aGUAcaggCUACCGCGUG-GUGUuGUGUa -3' miRNA: 3'- gaCAUaa--GAUGGCGCGCgCACA-CGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 140496 | 0.66 | 0.990842 |
Target: 5'- aCUGUGg---ACCGCGCaGCuuuUGCGCg -3' miRNA: 3'- -GACAUaagaUGGCGCG-CGcacACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 196207 | 0.66 | 0.990842 |
Target: 5'- ---gAUUCUA-CGCGCGgGUGacgccGCGCa -3' miRNA: 3'- gacaUAAGAUgGCGCGCgCACa----CGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 216373 | 0.66 | 0.990842 |
Target: 5'- uCUGguugUCUugCaGCGCGCccGUGgGCa -3' miRNA: 3'- -GACaua-AGAugG-CGCGCGcaCACgCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 82108 | 0.67 | 0.979205 |
Target: 5'- uCUGUaccGUUCUGCUGCGCuCGcUGcucUGCGUc -3' miRNA: 3'- -GACA---UAAGAUGGCGCGcGC-AC---ACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 641 | 0.67 | 0.974428 |
Target: 5'- uCUGcgcgCUGCCG-GUGCGUGUG-GCu -3' miRNA: 3'- -GACauaaGAUGGCgCGCGCACACgCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 62669 | 0.69 | 0.938366 |
Target: 5'- ----------aCGCGCGCGUGUGCGa -3' miRNA: 3'- gacauaagaugGCGCGCGCACACGCg -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 124430 | 0.73 | 0.817413 |
Target: 5'- -cGUGcugCgGCCGCGCGgGcGUGCGCg -3' miRNA: 3'- gaCAUaa-GaUGGCGCGCgCaCACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 192728 | 0.72 | 0.834113 |
Target: 5'- uCUGg---CUGCUGC-UGCGUGUGUGCu -3' miRNA: 3'- -GACauaaGAUGGCGcGCGCACACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 45455 | 0.72 | 0.865317 |
Target: 5'- gCUGcagacgGCUGUgucGCGCGUGUGCGCg -3' miRNA: 3'- -GACauaagaUGGCG---CGCGCACACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 111954 | 0.72 | 0.865317 |
Target: 5'- uCUGcg-UCUGCCGCGCG-GUG-GCGg -3' miRNA: 3'- -GACauaAGAUGGCGCGCgCACaCGCg -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 147857 | 0.7 | 0.911904 |
Target: 5'- -gGUGaccgUCUGCCGCcggcugagGUGCGUGcUGUGCa -3' miRNA: 3'- gaCAUa---AGAUGGCG--------CGCGCAC-ACGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 196694 | 0.7 | 0.911904 |
Target: 5'- aUGgug-CUGCUGgGCGCGUGgcaggagcugGCGCa -3' miRNA: 3'- gACauaaGAUGGCgCGCGCACa---------CGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 194968 | 0.7 | 0.917661 |
Target: 5'- gUGUGUcagggUgUGCCGCGgGUGUGU-CGCg -3' miRNA: 3'- gACAUA-----AgAUGGCGCgCGCACAcGCG- -5' |
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29803 | 3' | -53.4 | NC_006273.1 | + | 103765 | 0.7 | 0.923186 |
Target: 5'- -gGUAcUCgagcaACCGCGCGCGUGccaggccGUGCg -3' miRNA: 3'- gaCAUaAGa----UGGCGCGCGCACa------CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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