miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29803 3' -53.4 NC_006273.1 + 142423 1.13 0.004782
Target:  5'- gCUGUAUUCUACCGCGCGCGUGUGCGCg -3'
miRNA:   3'- -GACAUAAGAUGGCGCGCGCACACGCG- -5'
29803 3' -53.4 NC_006273.1 + 188150 0.67 0.979205
Target:  5'- -----gUCUGCCGCGUuucgggggcuuGCGUGUaacaaaaguaaaGCGCg -3'
miRNA:   3'- gacauaAGAUGGCGCG-----------CGCACA------------CGCG- -5'
29803 3' -53.4 NC_006273.1 + 156701 0.66 0.988234
Target:  5'- uCUGUAc-CUgcACCGUGUGCGUGUugaggaccugGUGCu -3'
miRNA:   3'- -GACAUaaGA--UGGCGCGCGCACA----------CGCG- -5'
29803 3' -53.4 NC_006273.1 + 190044 0.66 0.991856
Target:  5'- ---aGUUCgGCCgGCGCGCGcuugagcUGUGCGa -3'
miRNA:   3'- gacaUAAGaUGG-CGCGCGC-------ACACGCg -5'
29803 3' -53.4 NC_006273.1 + 1802 0.7 0.911904
Target:  5'- aUGgug-CUGCUGgGCGCGUGgcaggagcugGCGCa -3'
miRNA:   3'- gACauaaGAUGGCgCGCGCACa---------CGCG- -5'
29803 3' -53.4 NC_006273.1 + 75 0.7 0.917661
Target:  5'- gUGUGUcagggUgUGCCGCGgGUGUGU-CGCg -3'
miRNA:   3'- gACAUA-----AgAUGGCGCgCGCACAcGCG- -5'
29803 3' -53.4 NC_006273.1 + 44218 0.69 0.942963
Target:  5'- aUGggggUUACCGUGauCGCGUcGUGCGCg -3'
miRNA:   3'- gACauaaGAUGGCGC--GCGCA-CACGCG- -5'
29803 3' -53.4 NC_006273.1 + 174105 0.69 0.947331
Target:  5'- -cGUGUacacggccUCgGCCGCGCGCGcc-GCGCu -3'
miRNA:   3'- gaCAUA--------AGaUGGCGCGCGCacaCGCG- -5'
29803 3' -53.4 NC_006273.1 + 201895 0.68 0.968898
Target:  5'- ------aCUACCGCaGCGUGUcGcUGCGCa -3'
miRNA:   3'- gacauaaGAUGGCG-CGCGCA-C-ACGCG- -5'
29803 3' -53.4 NC_006273.1 + 233836 0.67 0.979205
Target:  5'- uUGUGUUUgACCguagagguguugGCGgGCcUGUGCGCa -3'
miRNA:   3'- gACAUAAGaUGG------------CGCgCGcACACGCG- -5'
29803 3' -53.4 NC_006273.1 + 40579 0.67 0.974428
Target:  5'- uCUGcgcgCUGCCG-GUGCGUGUG-GCu -3'
miRNA:   3'- -GACauaaGAUGGCgCGCGCACACgCG- -5'
29803 3' -53.4 NC_006273.1 + 43140 0.68 0.968898
Target:  5'- gUGUGguaUACCGCGUuaggcaccGCGUG-GCGUa -3'
miRNA:   3'- gACAUaagAUGGCGCG--------CGCACaCGCG- -5'
29803 3' -53.4 NC_006273.1 + 176270 0.77 0.585322
Target:  5'- -cGUGUUaaugaagcgCUACCGUGCGCGUGagcaGCGCu -3'
miRNA:   3'- gaCAUAA---------GAUGGCGCGCGCACa---CGCG- -5'
29803 3' -53.4 NC_006273.1 + 197750 0.67 0.974428
Target:  5'- -cGUGccUUUUGCCGCGCGgGUc-GCGUg -3'
miRNA:   3'- gaCAU--AAGAUGGCGCGCgCAcaCGCG- -5'
29803 3' -53.4 NC_006273.1 + 2349 0.75 0.705795
Target:  5'- gCUGUcgcacuUUCUGCgCGCGgGCGUGcuggGCGCg -3'
miRNA:   3'- -GACAu-----AAGAUG-GCGCgCGCACa---CGCG- -5'
29803 3' -53.4 NC_006273.1 + 58680 0.68 0.959086
Target:  5'- uUGUGgcugCUauugggucacaGCCGCGUGCcgcggGUGCGCg -3'
miRNA:   3'- gACAUaa--GA-----------UGGCGCGCGca---CACGCG- -5'
29803 3' -53.4 NC_006273.1 + 159231 0.67 0.979205
Target:  5'- -cGUGgauaacgcgUCUAgUCGCGCGaacuuaGUGUGCGUa -3'
miRNA:   3'- gaCAUa--------AGAU-GGCGCGCg-----CACACGCG- -5'
29803 3' -53.4 NC_006273.1 + 103226 0.66 0.988234
Target:  5'- -gGUGgaUC-ACUuCGCGCGUGUGCGg -3'
miRNA:   3'- gaCAUa-AGaUGGcGCGCGCACACGCg -5'
29803 3' -53.4 NC_006273.1 + 142450 0.72 0.834113
Target:  5'- ----------gCGUGCGCGUGUGCGCa -3'
miRNA:   3'- gacauaagaugGCGCGCGCACACGCG- -5'
29803 3' -53.4 NC_006273.1 + 234906 0.7 0.917661
Target:  5'- gUGUGUcagggUgUGCCGCGgGUGUGU-CGCg -3'
miRNA:   3'- gACAUA-----AgAUGGCGCgCGCACAcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.