miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29803 5' -52.8 NC_006273.1 + 32605 0.66 0.99168
Target:  5'- -gGUGaCGCagcaGCGCGCGgcucACGUAGCAGg -3'
miRNA:   3'- caCAC-GCG----UGUGCGCac--UGCAUUGUU- -5'
29803 5' -52.8 NC_006273.1 + 210339 0.66 0.99168
Target:  5'- cGUaUGCGcCACAuCGCGUGgcauaagaACGUGACGGa -3'
miRNA:   3'- -CAcACGC-GUGU-GCGCAC--------UGCAUUGUU- -5'
29803 5' -52.8 NC_006273.1 + 177133 0.66 0.99168
Target:  5'- gGUG-GCGCAUcUGUGgGGCGUGACGc -3'
miRNA:   3'- -CACaCGCGUGuGCGCaCUGCAUUGUu -5'
29803 5' -52.8 NC_006273.1 + 202794 0.66 0.99168
Target:  5'- cUGcUGCGuCAC-CGUGUGACGccgGGCAAg -3'
miRNA:   3'- cAC-ACGC-GUGuGCGCACUGCa--UUGUU- -5'
29803 5' -52.8 NC_006273.1 + 163600 0.66 0.99168
Target:  5'- cUGUGCGCGCGCuGUcaGACG-GGCGAg -3'
miRNA:   3'- cACACGCGUGUG-CGcaCUGCaUUGUU- -5'
29803 5' -52.8 NC_006273.1 + 195526 0.66 0.990503
Target:  5'- -cGUGCGCGucCACaGCGUGACuuugAGCGg -3'
miRNA:   3'- caCACGCGU--GUG-CGCACUGca--UUGUu -5'
29803 5' -52.8 NC_006273.1 + 131478 0.66 0.9892
Target:  5'- cGUG-GCGUACGC-CGUGGCGc-GCAAc -3'
miRNA:   3'- -CACaCGCGUGUGcGCACUGCauUGUU- -5'
29803 5' -52.8 NC_006273.1 + 168371 0.66 0.9892
Target:  5'- -aGU-CGCAgACGCGUcuguucgucgcGACGUAACAu -3'
miRNA:   3'- caCAcGCGUgUGCGCA-----------CUGCAUUGUu -5'
29803 5' -52.8 NC_006273.1 + 4310 0.66 0.988783
Target:  5'- -gGUGCGCAucacgcucuuguuuCACGCGUugcacagcGACGgugAACAAa -3'
miRNA:   3'- caCACGCGU--------------GUGCGCA--------CUGCa--UUGUU- -5'
29803 5' -52.8 NC_006273.1 + 93925 0.66 0.987762
Target:  5'- -gGUGCGCAUGCGCG-GGCcagGACc- -3'
miRNA:   3'- caCACGCGUGUGCGCaCUGca-UUGuu -5'
29803 5' -52.8 NC_006273.1 + 189371 0.66 0.98618
Target:  5'- cGUGagGCgGCACGCGUGUG-CGggGACGAc -3'
miRNA:   3'- -CACa-CG-CGUGUGCGCACuGCa-UUGUU- -5'
29803 5' -52.8 NC_006273.1 + 99991 0.66 0.986013
Target:  5'- -gGUGCGUGCgaaagcaGCGCGUGcacGCGUAgaGCGAg -3'
miRNA:   3'- caCACGCGUG-------UGCGCAC---UGCAU--UGUU- -5'
29803 5' -52.8 NC_006273.1 + 102268 0.67 0.984445
Target:  5'- uUGUcGCGUACgcugagaaugACGCGUGGCGgcggUGACAGg -3'
miRNA:   3'- cACA-CGCGUG----------UGCGCACUGC----AUUGUU- -5'
29803 5' -52.8 NC_006273.1 + 132450 0.67 0.98255
Target:  5'- -gGUGCGCgaGCACGCGUuuCGcAACGGa -3'
miRNA:   3'- caCACGCG--UGUGCGCAcuGCaUUGUU- -5'
29803 5' -52.8 NC_006273.1 + 90494 0.67 0.978245
Target:  5'- ---gGCGCGCGCGCuUGAgCGUGGCc- -3'
miRNA:   3'- cacaCGCGUGUGCGcACU-GCAUUGuu -5'
29803 5' -52.8 NC_006273.1 + 78840 0.67 0.973203
Target:  5'- ---aGCGCGagaggacguCACGCGUGACGcccuUGACGAa -3'
miRNA:   3'- cacaCGCGU---------GUGCGCACUGC----AUUGUU- -5'
29803 5' -52.8 NC_006273.1 + 163720 0.68 0.967364
Target:  5'- uUGUGCaGCAgGCGCGcGGCGguuUAGCAGc -3'
miRNA:   3'- cACACG-CGUgUGCGCaCUGC---AUUGUU- -5'
29803 5' -52.8 NC_006273.1 + 103936 0.68 0.964129
Target:  5'- ---aGCGgACACGCGcUGACGgaagGGCGAg -3'
miRNA:   3'- cacaCGCgUGUGCGC-ACUGCa---UUGUU- -5'
29803 5' -52.8 NC_006273.1 + 6154 0.68 0.960677
Target:  5'- -cGUGUGUACACGCcGUGgguGCGUAgacuGCAGu -3'
miRNA:   3'- caCACGCGUGUGCG-CAC---UGCAU----UGUU- -5'
29803 5' -52.8 NC_006273.1 + 211856 0.69 0.953099
Target:  5'- aGUGUGUGaagaGCGCGUGAuccaugcuCGUGGCAAc -3'
miRNA:   3'- -CACACGCgug-UGCGCACU--------GCAUUGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.