miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29803 5' -52.8 NC_006273.1 + 783 0.73 0.781151
Target:  5'- uUGUGCGCACugccguUGCGUGGCGUcccGCGGu -3'
miRNA:   3'- cACACGCGUGu-----GCGCACUGCAu--UGUU- -5'
29803 5' -52.8 NC_006273.1 + 4310 0.66 0.988783
Target:  5'- -gGUGCGCAucacgcucuuguuuCACGCGUugcacagcGACGgugAACAAa -3'
miRNA:   3'- caCACGCGU--------------GUGCGCA--------CUGCa--UUGUU- -5'
29803 5' -52.8 NC_006273.1 + 6154 0.68 0.960677
Target:  5'- -cGUGUGUACACGCcGUGgguGCGUAgacuGCAGu -3'
miRNA:   3'- caCACGCGUGUGCG-CAC---UGCAU----UGUU- -5'
29803 5' -52.8 NC_006273.1 + 32605 0.66 0.99168
Target:  5'- -gGUGaCGCagcaGCGCGCGgcucACGUAGCAGg -3'
miRNA:   3'- caCAC-GCG----UGUGCGCac--UGCAUUGUU- -5'
29803 5' -52.8 NC_006273.1 + 40721 0.73 0.781151
Target:  5'- uUGUGCGCACugccguUGCGUGGCGUcccGCGGu -3'
miRNA:   3'- cACACGCGUGu-----GCGCACUGCAu--UGUU- -5'
29803 5' -52.8 NC_006273.1 + 60898 0.72 0.842506
Target:  5'- cUG-GCGCGgGCGCGUGAUGcGACGGu -3'
miRNA:   3'- cACaCGCGUgUGCGCACUGCaUUGUU- -5'
29803 5' -52.8 NC_006273.1 + 62461 0.7 0.91333
Target:  5'- -gGUGCcgaaCACAUGCGUGACGUcagcuACAAg -3'
miRNA:   3'- caCACGc---GUGUGCGCACUGCAu----UGUU- -5'
29803 5' -52.8 NC_006273.1 + 78840 0.67 0.973203
Target:  5'- ---aGCGCGagaggacguCACGCGUGACGcccuUGACGAa -3'
miRNA:   3'- cacaCGCGU---------GUGCGCACUGC----AUUGUU- -5'
29803 5' -52.8 NC_006273.1 + 83654 0.69 0.948964
Target:  5'- -cGUGCGCAagGCGCGcGACGcGGCGc -3'
miRNA:   3'- caCACGCGUg-UGCGCaCUGCaUUGUu -5'
29803 5' -52.8 NC_006273.1 + 90494 0.67 0.978245
Target:  5'- ---gGCGCGCGCGCuUGAgCGUGGCc- -3'
miRNA:   3'- cacaCGCGUGUGCGcACU-GCAUUGuu -5'
29803 5' -52.8 NC_006273.1 + 92941 0.74 0.752651
Target:  5'- cGUGUGCGCACACGCGcacGCGc-GCAc -3'
miRNA:   3'- -CACACGCGUGUGCGCac-UGCauUGUu -5'
29803 5' -52.8 NC_006273.1 + 93925 0.66 0.987762
Target:  5'- -gGUGCGCAUGCGCG-GGCcagGACc- -3'
miRNA:   3'- caCACGCGUGUGCGCaCUGca-UUGuu -5'
29803 5' -52.8 NC_006273.1 + 99991 0.66 0.986013
Target:  5'- -gGUGCGUGCgaaagcaGCGCGUGcacGCGUAgaGCGAg -3'
miRNA:   3'- caCACGCGUG-------UGCGCAC---UGCAU--UGUU- -5'
29803 5' -52.8 NC_006273.1 + 102268 0.67 0.984445
Target:  5'- uUGUcGCGUACgcugagaaugACGCGUGGCGgcggUGACAGg -3'
miRNA:   3'- cACA-CGCGUG----------UGCGCACUGC----AUUGUU- -5'
29803 5' -52.8 NC_006273.1 + 103384 0.7 0.91333
Target:  5'- cUGUGCGCAgcgagGCGCauaGACGUAACAAg -3'
miRNA:   3'- cACACGCGUg----UGCGca-CUGCAUUGUU- -5'
29803 5' -52.8 NC_006273.1 + 103936 0.68 0.964129
Target:  5'- ---aGCGgACACGCGcUGACGgaagGGCGAg -3'
miRNA:   3'- cacaCGCgUGUGCGC-ACUGCa---UUGUU- -5'
29803 5' -52.8 NC_006273.1 + 131478 0.66 0.9892
Target:  5'- cGUG-GCGUACGC-CGUGGCGc-GCAAc -3'
miRNA:   3'- -CACaCGCGUGUGcGCACUGCauUGUU- -5'
29803 5' -52.8 NC_006273.1 + 132450 0.67 0.98255
Target:  5'- -gGUGCGCgaGCACGCGUuuCGcAACGGa -3'
miRNA:   3'- caCACGCG--UGUGCGCAcuGCaUUGUU- -5'
29803 5' -52.8 NC_006273.1 + 142457 1.07 0.01094
Target:  5'- cGUGUGCGCACACGCGUGACGUAACAAa -3'
miRNA:   3'- -CACACGCGUGUGCGCACUGCAUUGUU- -5'
29803 5' -52.8 NC_006273.1 + 163600 0.66 0.99168
Target:  5'- cUGUGCGCGCGCuGUcaGACG-GGCGAg -3'
miRNA:   3'- cACACGCGUGUG-CGcaCUGCaUUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.