Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29803 | 5' | -52.8 | NC_006273.1 | + | 99991 | 0.66 | 0.986013 |
Target: 5'- -gGUGCGUGCgaaagcaGCGCGUGcacGCGUAgaGCGAg -3' miRNA: 3'- caCACGCGUG-------UGCGCAC---UGCAU--UGUU- -5' |
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29803 | 5' | -52.8 | NC_006273.1 | + | 90494 | 0.67 | 0.978245 |
Target: 5'- ---gGCGCGCGCGCuUGAgCGUGGCc- -3' miRNA: 3'- cacaCGCGUGUGCGcACU-GCAUUGuu -5' |
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29803 | 5' | -52.8 | NC_006273.1 | + | 163720 | 0.68 | 0.967364 |
Target: 5'- uUGUGCaGCAgGCGCGcGGCGguuUAGCAGc -3' miRNA: 3'- cACACG-CGUgUGCGCaCUGC---AUUGUU- -5' |
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29803 | 5' | -52.8 | NC_006273.1 | + | 6154 | 0.68 | 0.960677 |
Target: 5'- -cGUGUGUACACGCcGUGgguGCGUAgacuGCAGu -3' miRNA: 3'- caCACGCGUGUGCG-CAC---UGCAU----UGUU- -5' |
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29803 | 5' | -52.8 | NC_006273.1 | + | 211856 | 0.69 | 0.953099 |
Target: 5'- aGUGUGUGaagaGCGCGUGAuccaugcuCGUGGCAAc -3' miRNA: 3'- -CACACGCgug-UGCGCACU--------GCAUUGUU- -5' |
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29803 | 5' | -52.8 | NC_006273.1 | + | 83654 | 0.69 | 0.948964 |
Target: 5'- -cGUGCGCAagGCGCGcGACGcGGCGc -3' miRNA: 3'- caCACGCGUg-UGCGCaCUGCaUUGUu -5' |
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29803 | 5' | -52.8 | NC_006273.1 | + | 167221 | 0.69 | 0.935139 |
Target: 5'- ---cGgGUACACGCGUGACGgaGCu- -3' miRNA: 3'- cacaCgCGUGUGCGCACUGCauUGuu -5' |
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29803 | 5' | -52.8 | NC_006273.1 | + | 40721 | 0.73 | 0.781151 |
Target: 5'- uUGUGCGCACugccguUGCGUGGCGUcccGCGGu -3' miRNA: 3'- cACACGCGUGu-----GCGCACUGCAu--UGUU- -5' |
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29803 | 5' | -52.8 | NC_006273.1 | + | 142457 | 1.07 | 0.01094 |
Target: 5'- cGUGUGCGCACACGCGUGACGUAACAAa -3' miRNA: 3'- -CACACGCGUGUGCGCACUGCAUUGUU- -5' |
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29803 | 5' | -52.8 | NC_006273.1 | + | 177133 | 0.66 | 0.99168 |
Target: 5'- gGUG-GCGCAUcUGUGgGGCGUGACGc -3' miRNA: 3'- -CACaCGCGUGuGCGCaCUGCAUUGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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