Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29805 | 3' | -53.7 | NC_006273.1 | + | 135097 | 0.66 | 0.982739 |
Target: 5'- --uCUCGCgcguggcCGuCUCGCUACGcCGUCg -3' miRNA: 3'- aucGAGCGaa-----GC-GAGCGAUGCaGUAG- -5' |
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29805 | 3' | -53.7 | NC_006273.1 | + | 49479 | 0.66 | 0.982739 |
Target: 5'- aAGCU-GCUUCGCUgCGCUugGaUCc-- -3' miRNA: 3'- aUCGAgCGAAGCGA-GCGAugC-AGuag -5' |
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29805 | 3' | -53.7 | NC_006273.1 | + | 144452 | 0.66 | 0.980703 |
Target: 5'- cGGCUCGCacuacacggGCUCGCgcgccgGCGUC-UCg -3' miRNA: 3'- aUCGAGCGaag------CGAGCGa-----UGCAGuAG- -5' |
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29805 | 3' | -53.7 | NC_006273.1 | + | 225785 | 0.66 | 0.978492 |
Target: 5'- -uGCUCGgugcUUUCGUgauccCGCUcaGCGUCAUCa -3' miRNA: 3'- auCGAGC----GAAGCGa----GCGA--UGCAGUAG- -5' |
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29805 | 3' | -53.7 | NC_006273.1 | + | 124455 | 0.66 | 0.978492 |
Target: 5'- cGGCUCGCcgacgcugCGCUCGCgguccagcCG-CAUCa -3' miRNA: 3'- aUCGAGCGaa------GCGAGCGau------GCaGUAG- -5' |
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29805 | 3' | -53.7 | NC_006273.1 | + | 34867 | 0.66 | 0.978492 |
Target: 5'- gAGCggaUCGCgaaauaggCGCUCGUcacCGUCGUCa -3' miRNA: 3'- aUCG---AGCGaa------GCGAGCGau-GCAGUAG- -5' |
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29805 | 3' | -53.7 | NC_006273.1 | + | 187947 | 0.67 | 0.967758 |
Target: 5'- --aCUCGCcgCGCUCGCggGCGUCc-- -3' miRNA: 3'- aucGAGCGaaGCGAGCGa-UGCAGuag -5' |
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29805 | 3' | -53.7 | NC_006273.1 | + | 82115 | 0.67 | 0.967758 |
Target: 5'- -cGUUCuGCUgCGCUCGCUGCucugCGUCc -3' miRNA: 3'- auCGAG-CGAaGCGAGCGAUGca--GUAG- -5' |
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29805 | 3' | -53.7 | NC_006273.1 | + | 130405 | 0.67 | 0.964568 |
Target: 5'- cUGGCUCaGCUgcaUCGCgacCGCgcccGCGUCAUg -3' miRNA: 3'- -AUCGAG-CGA---AGCGa--GCGa---UGCAGUAg -5' |
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29805 | 3' | -53.7 | NC_006273.1 | + | 163330 | 0.67 | 0.967758 |
Target: 5'- gAGCUCGUacacUGCUCGCUcuGCGgcaGUCa -3' miRNA: 3'- aUCGAGCGaa--GCGAGCGA--UGCag-UAG- -5' |
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29805 | 3' | -53.7 | NC_006273.1 | + | 219954 | 0.68 | 0.943958 |
Target: 5'- -cGCUCGCgcUCGCgUCGCUcaucgggcaacgcgGCGUCuUCg -3' miRNA: 3'- auCGAGCGa-AGCG-AGCGA--------------UGCAGuAG- -5' |
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29805 | 3' | -53.7 | NC_006273.1 | + | 192642 | 0.69 | 0.908463 |
Target: 5'- gUAGCUCGCcgUCGCUaUGCgGC-UCGUCg -3' miRNA: 3'- -AUCGAGCGa-AGCGA-GCGaUGcAGUAG- -5' |
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29805 | 3' | -53.7 | NC_006273.1 | + | 161730 | 0.7 | 0.8958 |
Target: 5'- -cGCUCGCgcuuugCGC-CGCcGCGUCAUg -3' miRNA: 3'- auCGAGCGaa----GCGaGCGaUGCAGUAg -5' |
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29805 | 3' | -53.7 | NC_006273.1 | + | 100364 | 0.7 | 0.882215 |
Target: 5'- gGGCggaCGCUUCuGCagaUCGCagACGUCGUCg -3' miRNA: 3'- aUCGa--GCGAAG-CG---AGCGa-UGCAGUAG- -5' |
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29805 | 3' | -53.7 | NC_006273.1 | + | 141679 | 0.7 | 0.867739 |
Target: 5'- gGGCUCGCUcggccUCGCUCGgaACGaCGacUCa -3' miRNA: 3'- aUCGAGCGA-----AGCGAGCgaUGCaGU--AG- -5' |
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29805 | 3' | -53.7 | NC_006273.1 | + | 119178 | 0.7 | 0.882215 |
Target: 5'- cAGC-CGCUgaGCUCGCUGCGUUu-- -3' miRNA: 3'- aUCGaGCGAagCGAGCGAUGCAGuag -5' |
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29805 | 3' | -53.7 | NC_006273.1 | + | 68130 | 0.71 | 0.86018 |
Target: 5'- gAGCg-GCUagaUCGCUCGCUGCGcCAg- -3' miRNA: 3'- aUCGagCGA---AGCGAGCGAUGCaGUag -5' |
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29805 | 3' | -53.7 | NC_006273.1 | + | 38507 | 0.72 | 0.819423 |
Target: 5'- -cGCUCGC--CGCUgGCggcgACGUCGUCc -3' miRNA: 3'- auCGAGCGaaGCGAgCGa---UGCAGUAG- -5' |
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29805 | 3' | -53.7 | NC_006273.1 | + | 213135 | 0.72 | 0.774413 |
Target: 5'- gAGC-CGCgUCGCUCGCcggcgccCGUCAUCu -3' miRNA: 3'- aUCGaGCGaAGCGAGCGau-----GCAGUAG- -5' |
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29805 | 3' | -53.7 | NC_006273.1 | + | 152662 | 0.72 | 0.792861 |
Target: 5'- cGGC-CGCcUCGCUCGgCUugGUCuUCa -3' miRNA: 3'- aUCGaGCGaAGCGAGC-GAugCAGuAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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