Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29805 | 3' | -53.7 | NC_006273.1 | + | 213135 | 0.72 | 0.774413 |
Target: 5'- gAGC-CGCgUCGCUCGCcggcgccCGUCAUCu -3' miRNA: 3'- aUCGaGCGaAGCGAGCGau-----GCAGUAG- -5' |
|||||||
29805 | 3' | -53.7 | NC_006273.1 | + | 219954 | 0.68 | 0.943958 |
Target: 5'- -cGCUCGCgcUCGCgUCGCUcaucgggcaacgcgGCGUCuUCg -3' miRNA: 3'- auCGAGCGa-AGCG-AGCGA--------------UGCAGuAG- -5' |
|||||||
29805 | 3' | -53.7 | NC_006273.1 | + | 225785 | 0.66 | 0.978492 |
Target: 5'- -uGCUCGgugcUUUCGUgauccCGCUcaGCGUCAUCa -3' miRNA: 3'- auCGAGC----GAAGCGa----GCGA--UGCAGUAG- -5' |
|||||||
29805 | 3' | -53.7 | NC_006273.1 | + | 233400 | 0.72 | 0.819423 |
Target: 5'- -cGCUCGC--CGCUgGCggcgACGUCGUCc -3' miRNA: 3'- auCGAGCGaaGCGAgCGa---UGCAGUAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home