miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29805 5' -49.4 NC_006273.1 + 7835 0.65 0.999783
Target:  5'- cGGAUGACGUauauaacagcaGCGUggguaccgucacuaGUgACGUGGCGUGa -3'
miRNA:   3'- cUCUACUGCA-----------UGCG--------------UA-UGCACUGCAU- -5'
29805 5' -49.4 NC_006273.1 + 78844 0.66 0.999678
Target:  5'- cGAGAgGACGUcACGCGUgACGcccuUGACGa- -3'
miRNA:   3'- -CUCUaCUGCA-UGCGUA-UGC----ACUGCau -5'
29805 5' -49.4 NC_006273.1 + 73070 0.66 0.999678
Target:  5'- aGAGAUGAaggACGCAagaACGUGGCa-- -3'
miRNA:   3'- -CUCUACUgcaUGCGUa--UGCACUGcau -5'
29805 5' -49.4 NC_006273.1 + 101289 0.66 0.999597
Target:  5'- -uGAUGAUGUGucCGCcggugcccccgaGUGCGUGGCGg- -3'
miRNA:   3'- cuCUACUGCAU--GCG------------UAUGCACUGCau -5'
29805 5' -49.4 NC_006273.1 + 187403 0.66 0.999498
Target:  5'- cGAGGUGuACGUggACGCGgGCGUGGugguuCGUGu -3'
miRNA:   3'- -CUCUAC-UGCA--UGCGUaUGCACU-----GCAU- -5'
29805 5' -49.4 NC_006273.1 + 22245 0.67 0.999067
Target:  5'- cAGAUGACGgGCGCcgGCGagcGACGc- -3'
miRNA:   3'- cUCUACUGCaUGCGuaUGCa--CUGCau -5'
29805 5' -49.4 NC_006273.1 + 93844 0.67 0.998603
Target:  5'- uGGGAUGugGccucgagUGCGCAUGCGccgggGAUGUc -3'
miRNA:   3'- -CUCUACugC-------AUGCGUAUGCa----CUGCAu -5'
29805 5' -49.4 NC_006273.1 + 156344 0.68 0.998062
Target:  5'- -uGGUGGCGcgugggcccagccugGCGCAcUACGUGACGg- -3'
miRNA:   3'- cuCUACUGCa--------------UGCGU-AUGCACUGCau -5'
29805 5' -49.4 NC_006273.1 + 192349 0.68 0.99672
Target:  5'- cGAGGUG-CGuUGCGCGgcCGUGGCGc- -3'
miRNA:   3'- -CUCUACuGC-AUGCGUauGCACUGCau -5'
29805 5' -49.4 NC_006273.1 + 195516 0.68 0.99672
Target:  5'- -cGAUGgaacGCGUGCGCGUccacaGCGUGACu-- -3'
miRNA:   3'- cuCUAC----UGCAUGCGUA-----UGCACUGcau -5'
29805 5' -49.4 NC_006273.1 + 154039 0.69 0.996151
Target:  5'- aAGA--GCGUGCGCAaggGCGuUGACGUGc -3'
miRNA:   3'- cUCUacUGCAUGCGUa--UGC-ACUGCAU- -5'
29805 5' -49.4 NC_006273.1 + 193822 0.69 0.996151
Target:  5'- -cGgcGGCGacaGCGCAUGCuGUGGCGUAu -3'
miRNA:   3'- cuCuaCUGCa--UGCGUAUG-CACUGCAU- -5'
29805 5' -49.4 NC_006273.1 + 163539 0.69 0.995503
Target:  5'- ----gGugGUACGCG-GCGUGACGg- -3'
miRNA:   3'- cucuaCugCAUGCGUaUGCACUGCau -5'
29805 5' -49.4 NC_006273.1 + 181345 0.7 0.988095
Target:  5'- cGAGAcGACGguaacaacCGCcgGCGUGACGUc -3'
miRNA:   3'- -CUCUaCUGCau------GCGuaUGCACUGCAu -5'
29805 5' -49.4 NC_006273.1 + 41147 0.7 0.988095
Target:  5'- cGGGAUGGCGa--GCuguUGCGUGGCGg- -3'
miRNA:   3'- -CUCUACUGCaugCGu--AUGCACUGCau -5'
29805 5' -49.4 NC_006273.1 + 1209 0.7 0.988095
Target:  5'- cGGGAUGGCGa--GCuguUGCGUGGCGg- -3'
miRNA:   3'- -CUCUACUGCaugCGu--AUGCACUGCau -5'
29805 5' -49.4 NC_006273.1 + 168197 0.71 0.980848
Target:  5'- ---uUGACcaucUGCGCGUACGUGGCGUu -3'
miRNA:   3'- cucuACUGc---AUGCGUAUGCACUGCAu -5'
29805 5' -49.4 NC_006273.1 + 142443 0.71 0.978607
Target:  5'- --uGUGcgcGCGUGCGCGUgugcgcacacGCGUGACGUAa -3'
miRNA:   3'- cucUAC---UGCAUGCGUA----------UGCACUGCAU- -5'
29805 5' -49.4 NC_006273.1 + 142005 0.73 0.957237
Target:  5'- uGGGUGugGcUACGCGagUGUGACGUGg -3'
miRNA:   3'- cUCUACugC-AUGCGUauGCACUGCAU- -5'
29805 5' -49.4 NC_006273.1 + 43137 0.73 0.953295
Target:  5'- cGGGUGugGUAuacCGCGUuaggcaccGCGUGGCGUAc -3'
miRNA:   3'- cUCUACugCAU---GCGUA--------UGCACUGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.