Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29805 | 5' | -49.4 | NC_006273.1 | + | 1209 | 0.7 | 0.988095 |
Target: 5'- cGGGAUGGCGa--GCuguUGCGUGGCGg- -3' miRNA: 3'- -CUCUACUGCaugCGu--AUGCACUGCau -5' |
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29805 | 5' | -49.4 | NC_006273.1 | + | 7835 | 0.65 | 0.999783 |
Target: 5'- cGGAUGACGUauauaacagcaGCGUggguaccgucacuaGUgACGUGGCGUGa -3' miRNA: 3'- cUCUACUGCA-----------UGCG--------------UA-UGCACUGCAU- -5' |
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29805 | 5' | -49.4 | NC_006273.1 | + | 22245 | 0.67 | 0.999067 |
Target: 5'- cAGAUGACGgGCGCcgGCGagcGACGc- -3' miRNA: 3'- cUCUACUGCaUGCGuaUGCa--CUGCau -5' |
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29805 | 5' | -49.4 | NC_006273.1 | + | 41147 | 0.7 | 0.988095 |
Target: 5'- cGGGAUGGCGa--GCuguUGCGUGGCGg- -3' miRNA: 3'- -CUCUACUGCaugCGu--AUGCACUGCau -5' |
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29805 | 5' | -49.4 | NC_006273.1 | + | 43137 | 0.73 | 0.953295 |
Target: 5'- cGGGUGugGUAuacCGCGUuaggcaccGCGUGGCGUAc -3' miRNA: 3'- cUCUACugCAU---GCGUA--------UGCACUGCAU- -5' |
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29805 | 5' | -49.4 | NC_006273.1 | + | 73070 | 0.66 | 0.999678 |
Target: 5'- aGAGAUGAaggACGCAagaACGUGGCa-- -3' miRNA: 3'- -CUCUACUgcaUGCGUa--UGCACUGcau -5' |
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29805 | 5' | -49.4 | NC_006273.1 | + | 78844 | 0.66 | 0.999678 |
Target: 5'- cGAGAgGACGUcACGCGUgACGcccuUGACGa- -3' miRNA: 3'- -CUCUaCUGCA-UGCGUA-UGC----ACUGCau -5' |
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29805 | 5' | -49.4 | NC_006273.1 | + | 93844 | 0.67 | 0.998603 |
Target: 5'- uGGGAUGugGccucgagUGCGCAUGCGccgggGAUGUc -3' miRNA: 3'- -CUCUACugC-------AUGCGUAUGCa----CUGCAu -5' |
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29805 | 5' | -49.4 | NC_006273.1 | + | 101289 | 0.66 | 0.999597 |
Target: 5'- -uGAUGAUGUGucCGCcggugcccccgaGUGCGUGGCGg- -3' miRNA: 3'- cuCUACUGCAU--GCG------------UAUGCACUGCau -5' |
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29805 | 5' | -49.4 | NC_006273.1 | + | 141916 | 1.07 | 0.023647 |
Target: 5'- gGAGAUGACGUACGCAUACGUGACGUAg -3' miRNA: 3'- -CUCUACUGCAUGCGUAUGCACUGCAU- -5' |
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29805 | 5' | -49.4 | NC_006273.1 | + | 142005 | 0.73 | 0.957237 |
Target: 5'- uGGGUGugGcUACGCGagUGUGACGUGg -3' miRNA: 3'- cUCUACugC-AUGCGUauGCACUGCAU- -5' |
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29805 | 5' | -49.4 | NC_006273.1 | + | 142443 | 0.71 | 0.978607 |
Target: 5'- --uGUGcgcGCGUGCGCGUgugcgcacacGCGUGACGUAa -3' miRNA: 3'- cucUAC---UGCAUGCGUA----------UGCACUGCAU- -5' |
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29805 | 5' | -49.4 | NC_006273.1 | + | 154039 | 0.69 | 0.996151 |
Target: 5'- aAGA--GCGUGCGCAaggGCGuUGACGUGc -3' miRNA: 3'- cUCUacUGCAUGCGUa--UGC-ACUGCAU- -5' |
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29805 | 5' | -49.4 | NC_006273.1 | + | 156344 | 0.68 | 0.998062 |
Target: 5'- -uGGUGGCGcgugggcccagccugGCGCAcUACGUGACGg- -3' miRNA: 3'- cuCUACUGCa--------------UGCGU-AUGCACUGCau -5' |
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29805 | 5' | -49.4 | NC_006273.1 | + | 163539 | 0.69 | 0.995503 |
Target: 5'- ----gGugGUACGCG-GCGUGACGg- -3' miRNA: 3'- cucuaCugCAUGCGUaUGCACUGCau -5' |
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29805 | 5' | -49.4 | NC_006273.1 | + | 168197 | 0.71 | 0.980848 |
Target: 5'- ---uUGACcaucUGCGCGUACGUGGCGUu -3' miRNA: 3'- cucuACUGc---AUGCGUAUGCACUGCAu -5' |
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29805 | 5' | -49.4 | NC_006273.1 | + | 181345 | 0.7 | 0.988095 |
Target: 5'- cGAGAcGACGguaacaacCGCcgGCGUGACGUc -3' miRNA: 3'- -CUCUaCUGCau------GCGuaUGCACUGCAu -5' |
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29805 | 5' | -49.4 | NC_006273.1 | + | 187403 | 0.66 | 0.999498 |
Target: 5'- cGAGGUGuACGUggACGCGgGCGUGGugguuCGUGu -3' miRNA: 3'- -CUCUAC-UGCA--UGCGUaUGCACU-----GCAU- -5' |
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29805 | 5' | -49.4 | NC_006273.1 | + | 192349 | 0.68 | 0.99672 |
Target: 5'- cGAGGUG-CGuUGCGCGgcCGUGGCGc- -3' miRNA: 3'- -CUCUACuGC-AUGCGUauGCACUGCau -5' |
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29805 | 5' | -49.4 | NC_006273.1 | + | 193822 | 0.69 | 0.996151 |
Target: 5'- -cGgcGGCGacaGCGCAUGCuGUGGCGUAu -3' miRNA: 3'- cuCuaCUGCa--UGCGUAUG-CACUGCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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