miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 3' -64.1 NC_006273.1 + 129577 0.66 0.712483
Target:  5'- aGUCGUCGG-CGGCUccgcuauGCCGCGccggguuuuacacGUCCCCg -3'
miRNA:   3'- -CAGCAGCCgGCUGG-------CGGCGC-------------UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 113476 0.66 0.684225
Target:  5'- -aCGUUGGCCGACCugcuggguucggauGCCGUaGCCggcggcggguugCCCg -3'
miRNA:   3'- caGCAGCCGGCUGG--------------CGGCGcUGG------------GGG- -5'
29806 3' -64.1 NC_006273.1 + 53180 0.66 0.723288
Target:  5'- --gGUCGGCUGACCGaCCGCauuGACgCa- -3'
miRNA:   3'- cagCAGCCGGCUGGC-GGCG---CUGgGgg -5'
29806 3' -64.1 NC_006273.1 + 76630 0.66 0.705234
Target:  5'- cGUCGaCGGCgcACUGgCGCGACCcgaCCCg -3'
miRNA:   3'- -CAGCaGCCGgcUGGCgGCGCUGG---GGG- -5'
29806 3' -64.1 NC_006273.1 + 128639 0.66 0.705234
Target:  5'- -aCGUUGGCCGugCuuaccaucacGCCacugaucuUGGCCCCCg -3'
miRNA:   3'- caGCAGCCGGCugG----------CGGc-------GCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 33465 0.66 0.67779
Target:  5'- cGUC-UCGGUuuucuguugaugUGugCGuuGcCGACCCCCg -3'
miRNA:   3'- -CAGcAGCCG------------GCugGCggC-GCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 153081 0.66 0.712483
Target:  5'- uGUCGaugaCGGCCucgucauccaCGCCGCGGCCCa- -3'
miRNA:   3'- -CAGCa---GCCGGcug-------GCGGCGCUGGGgg -5'
29806 3' -64.1 NC_006273.1 + 103528 0.66 0.71429
Target:  5'- cGUCGaugCGGCCG-CCGuaGCcGGCcagCCCCa -3'
miRNA:   3'- -CAGCa--GCCGGCuGGCggCG-CUG---GGGG- -5'
29806 3' -64.1 NC_006273.1 + 62086 0.66 0.71429
Target:  5'- -gCGUCGaCCGAgCGCCGCGGCa--- -3'
miRNA:   3'- caGCAGCcGGCUgGCGGCGCUGgggg -5'
29806 3' -64.1 NC_006273.1 + 145404 0.66 0.686978
Target:  5'- aGUUGcUGGCCGGCgGUCGCGuuUUCCa -3'
miRNA:   3'- -CAGCaGCCGGCUGgCGGCGCugGGGG- -5'
29806 3' -64.1 NC_006273.1 + 95227 0.66 0.722391
Target:  5'- cGUCGUCuacgacggcguuuGGCCcgagacccACCGCCGUucuuuuCCCCCg -3'
miRNA:   3'- -CAGCAG-------------CCGGc-------UGGCGGCGcu----GGGGG- -5'
29806 3' -64.1 NC_006273.1 + 22315 0.66 0.71429
Target:  5'- -gCGgcagCGGCgccaaCGAaCGCCGCGACUCCg -3'
miRNA:   3'- caGCa---GCCG-----GCUgGCGGCGCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 19881 0.66 0.683307
Target:  5'- cGUUGaccUGGaCCGACCGCCGCuuuggucuggaucGCUCCCg -3'
miRNA:   3'- -CAGCa--GCC-GGCUGGCGGCGc------------UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 161674 0.66 0.720595
Target:  5'- gGUCGgcgcUCuGCCGGCUGCgGCGgcacucgcuccacgGCCUCCg -3'
miRNA:   3'- -CAGC----AGcCGGCUGGCGgCGC--------------UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 25087 0.66 0.686978
Target:  5'- -aCGUCGGUU-ACCG-CGUG-CCCCCg -3'
miRNA:   3'- caGCAGCCGGcUGGCgGCGCuGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 195570 0.66 0.71429
Target:  5'- cGUCGUCGGCUG-CCGggugguuuuCCaCGGCCUUCc -3'
miRNA:   3'- -CAGCAGCCGGCuGGC---------GGcGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 79477 0.66 0.696128
Target:  5'- uUCGcgcaCGGCaCG-CCGCUGCGAaaCCCa -3'
miRNA:   3'- cAGCa---GCCG-GCuGGCGGCGCUggGGG- -5'
29806 3' -64.1 NC_006273.1 + 154432 0.66 0.723288
Target:  5'- ----cUGGCCGAcCCGCUggGCGACUCgCCg -3'
miRNA:   3'- cagcaGCCGGCU-GGCGG--CGCUGGG-GG- -5'
29806 3' -64.1 NC_006273.1 + 99316 0.66 0.67779
Target:  5'- cGUCGUCGGa-GGCCGgUGCGucgUCCUCa -3'
miRNA:   3'- -CAGCAGCCggCUGGCgGCGCu--GGGGG- -5'
29806 3' -64.1 NC_006273.1 + 96055 0.66 0.67779
Target:  5'- aGUCG-CGGgC-ACCGCCuCGguACCCCCu -3'
miRNA:   3'- -CAGCaGCCgGcUGGCGGcGC--UGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.