miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 3' -64.1 NC_006273.1 + 133730 0.67 0.622239
Target:  5'- -gCGUUGGCCGaguagcguGCCGUCGUG-CCUUCg -3'
miRNA:   3'- caGCAGCCGGC--------UGGCGGCGCuGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 147812 0.67 0.622239
Target:  5'- gGUgG-CGGCCGugCcgaGCCGCGGCUUCa -3'
miRNA:   3'- -CAgCaGCCGGCugG---CGGCGCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 33102 0.67 0.639867
Target:  5'- cUCGUCGGUcgaugaccccaCGgugcuuauaacgcGCCGCCGCGGCUUCa -3'
miRNA:   3'- cAGCAGCCG-----------GC-------------UGGCGGCGCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 204717 0.67 0.622239
Target:  5'- -cCG-CGGCCGGCCGCagGaaGCCgCCCg -3'
miRNA:   3'- caGCaGCCGGCUGGCGg-CgcUGG-GGG- -5'
29806 3' -64.1 NC_006273.1 + 194170 0.67 0.640795
Target:  5'- -cCGUCuguguuccCCGuguCCGCCGCGaaagGCCCCCg -3'
miRNA:   3'- caGCAGcc------GGCu--GGCGGCGC----UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 148846 0.67 0.622239
Target:  5'- cGUCGcUGGCUGuuGCCGCCGCuGCCgCg -3'
miRNA:   3'- -CAGCaGCCGGC--UGGCGGCGcUGGgGg -5'
29806 3' -64.1 NC_006273.1 + 4911 0.67 0.640795
Target:  5'- --aGcCGGCCGAuucgcCCGCCGgGGCUUCUg -3'
miRNA:   3'- cagCaGCCGGCU-----GGCGGCgCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 94385 0.67 0.631517
Target:  5'- -cCGUgGGCCGggcACCgGgCGCGGCCCgCu -3'
miRNA:   3'- caGCAgCCGGC---UGG-CgGCGCUGGGgG- -5'
29806 3' -64.1 NC_006273.1 + 195759 0.67 0.625949
Target:  5'- cGUCGgagguguccggCGGCCauggcccagcgcaacGGCauguCGCCGCGcCCCCCg -3'
miRNA:   3'- -CAGCa----------GCCGG---------------CUG----GCGGCGCuGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 133646 0.67 0.668571
Target:  5'- -cCGcCGG-CGACCGCCGUcuGAgCCUCa -3'
miRNA:   3'- caGCaGCCgGCUGGCGGCG--CUgGGGG- -5'
29806 3' -64.1 NC_006273.1 + 192356 0.67 0.667648
Target:  5'- cGUUGcgCGGCCGugGCgCGUCGCGGCUacacuuaCCCg -3'
miRNA:   3'- -CAGCa-GCCGGC--UG-GCGGCGCUGG-------GGG- -5'
29806 3' -64.1 NC_006273.1 + 137963 0.67 0.668571
Target:  5'- cGUCGUCGGUC--UCGa-GCGcCCCCCg -3'
miRNA:   3'- -CAGCAGCCGGcuGGCggCGCuGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 76618 0.67 0.668571
Target:  5'- -gCGUCcguGGCCG-CgGCCgGCGGCCUCUu -3'
miRNA:   3'- caGCAG---CCGGCuGgCGG-CGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 143144 0.67 0.659328
Target:  5'- -cCGUCuuucaggagacgGGCaCGGCgCGCCGC-AUCCCCa -3'
miRNA:   3'- caGCAG------------CCG-GCUG-GCGGCGcUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 196508 0.67 0.653773
Target:  5'- gGUgGUgCGGCUGuACCGCUGCaaccggcugggcgugGGCaCCCCg -3'
miRNA:   3'- -CAgCA-GCCGGC-UGGCGGCG---------------CUG-GGGG- -5'
29806 3' -64.1 NC_006273.1 + 87799 0.67 0.640795
Target:  5'- -gCGUCGuGa--GCCGCgGCGGCUCCCa -3'
miRNA:   3'- caGCAGC-CggcUGGCGgCGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 118448 0.67 0.640795
Target:  5'- -cCGUcaCGGUCGGCCGCCGUGAggUCUg -3'
miRNA:   3'- caGCA--GCCGGCUGGCGGCGCUggGGG- -5'
29806 3' -64.1 NC_006273.1 + 112511 0.67 0.656551
Target:  5'- --aGUCGGCaCGAugccaucacgggacCCGUCGCcGCCCCg -3'
miRNA:   3'- cagCAGCCG-GCU--------------GGCGGCGcUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 140341 0.67 0.659328
Target:  5'- -cCGgCGGCUaGGCCGa-GgGACCCCCg -3'
miRNA:   3'- caGCaGCCGG-CUGGCggCgCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 71597 0.67 0.659328
Target:  5'- cUCGUccucauggCGGuuGuuucuCCGUCGCGAUCUCCg -3'
miRNA:   3'- cAGCA--------GCCggCu----GGCGGCGCUGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.