Results 21 - 40 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29806 | 3' | -64.1 | NC_006273.1 | + | 202151 | 0.71 | 0.428167 |
Target: 5'- cGUCGUC-GCCG-CC-CCGgGGCCCUCg -3' miRNA: 3'- -CAGCAGcCGGCuGGcGGCgCUGGGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 198144 | 0.71 | 0.428167 |
Target: 5'- cGUCGUC-GCCG-CCGUCGCGcCUUCCu -3' miRNA: 3'- -CAGCAGcCGGCuGGCGGCGCuGGGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 77157 | 0.71 | 0.436273 |
Target: 5'- cGUCGcCGGCCGACgCGCgccCGCG-CCUCa -3' miRNA: 3'- -CAGCaGCCGGCUG-GCG---GCGCuGGGGg -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 75261 | 0.71 | 0.420151 |
Target: 5'- -gCGcUGGCCG-CCGCgGCGGCCgCCu -3' miRNA: 3'- caGCaGCCGGCuGGCGgCGCUGGgGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 233428 | 0.71 | 0.396658 |
Target: 5'- cGUCGcCGGCC--CCGCCGCGcaACCCagCCa -3' miRNA: 3'- -CAGCaGCCGGcuGGCGGCGC--UGGG--GG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 64832 | 0.71 | 0.396658 |
Target: 5'- aGUCGcgguUCGGCCgGACCGUgcacgcgcucuCGCGGCCUUCa -3' miRNA: 3'- -CAGC----AGCCGG-CUGGCG-----------GCGCUGGGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 17181 | 0.71 | 0.420151 |
Target: 5'- -aUGcCGGUCGuCCGCCGuCGGCCgCCg -3' miRNA: 3'- caGCaGCCGGCuGGCGGC-GCUGGgGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 68198 | 0.71 | 0.412227 |
Target: 5'- -aCGcCGGCCuccgcGGCCGCUGCG-CCCgCCg -3' miRNA: 3'- caGCaGCCGG-----CUGGCGGCGCuGGG-GG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 201139 | 0.71 | 0.436273 |
Target: 5'- cUCaUCGGCCGcuGCCuGCCgGCGGCCCUg -3' miRNA: 3'- cAGcAGCCGGC--UGG-CGG-CGCUGGGGg -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 164437 | 0.71 | 0.436273 |
Target: 5'- cGUCGUCGuCUG-CgGCCGCGGCCgCUCg -3' miRNA: 3'- -CAGCAGCcGGCuGgCGGCGCUGG-GGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 38535 | 0.71 | 0.396658 |
Target: 5'- cGUCGcCGGCC--CCGCCGCGcaACCCagCCa -3' miRNA: 3'- -CAGCaGCCGGcuGGCGGCGC--UGGG--GG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 116887 | 0.7 | 0.444467 |
Target: 5'- -aCGUUGGCCGugUacgGgCGCGAUCCCg -3' miRNA: 3'- caGCAGCCGGCugG---CgGCGCUGGGGg -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 191483 | 0.7 | 0.469552 |
Target: 5'- --aGUCGGCgCcGCCGCCGCuugGACCUUCg -3' miRNA: 3'- cagCAGCCG-GcUGGCGGCG---CUGGGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 95304 | 0.7 | 0.469552 |
Target: 5'- gGUCGaCGGUgGGCCGCCaUGACaCCUCa -3' miRNA: 3'- -CAGCaGCCGgCUGGCGGcGCUG-GGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 114208 | 0.7 | 0.486671 |
Target: 5'- -aUGUCGGCCGAUCGC-GCcGCCUCg -3' miRNA: 3'- caGCAGCCGGCUGGCGgCGcUGGGGg -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 132362 | 0.7 | 0.486671 |
Target: 5'- -cCG-CGGCCGcuGCCGCCGCGGCgUUUCg -3' miRNA: 3'- caGCaGCCGGC--UGGCGGCGCUG-GGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 233357 | 0.7 | 0.486671 |
Target: 5'- aUCGcgcaCGGCgCGuccCCGCCgGCGGCCUCCg -3' miRNA: 3'- cAGCa---GCCG-GCu--GGCGG-CGCUGGGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 233205 | 0.7 | 0.495341 |
Target: 5'- -cCGUCGGC--GCCGCCGCuGCUgCCg -3' miRNA: 3'- caGCAGCCGgcUGGCGGCGcUGGgGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 227023 | 0.7 | 0.495341 |
Target: 5'- -aCGaUGGCCGcacagacccuaGCCGuuGCGAUCCCUa -3' miRNA: 3'- caGCaGCCGGC-----------UGGCggCGCUGGGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 153779 | 0.7 | 0.444467 |
Target: 5'- -cCGcuUCGGCCu-CCGCCGCGGCCgCg -3' miRNA: 3'- caGC--AGCCGGcuGGCGGCGCUGGgGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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