miRNA display CGI


Results 1 - 20 of 180 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 3' -64.1 NC_006273.1 + 140578 1.11 0.000855
Target:  5'- cGUCGUCGGCCGACCGCCGCGACCCCCa -3'
miRNA:   3'- -CAGCAGCCGGCUGGCGGCGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 70846 0.78 0.160682
Target:  5'- -----gGGCCGACCGCCGCGcCCUCCc -3'
miRNA:   3'- cagcagCCGGCUGGCGGCGCuGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 60040 0.77 0.188598
Target:  5'- -cCGcCuGGCUGACCGCCcaaCGACCCCCg -3'
miRNA:   3'- caGCaG-CCGGCUGGCGGc--GCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 38754 0.75 0.235818
Target:  5'- cGUCGUgcCGGCCcACCGCCgGCGcaGCUCCCg -3'
miRNA:   3'- -CAGCA--GCCGGcUGGCGG-CGC--UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 233646 0.75 0.235818
Target:  5'- cGUCGUgcCGGCCcACCGCCgGCGcaGCUCCCg -3'
miRNA:   3'- -CAGCA--GCCGGcUGGCGG-CGC--UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 198730 0.75 0.246378
Target:  5'- aGUCGUCGGCUacCCGCCGCcaGGCCaguuCCCg -3'
miRNA:   3'- -CAGCAGCCGGcuGGCGGCG--CUGG----GGG- -5'
29806 3' -64.1 NC_006273.1 + 163590 0.75 0.251804
Target:  5'- cGUUGUC-GCC-ACCGCCGCGGCUgCCa -3'
miRNA:   3'- -CAGCAGcCGGcUGGCGGCGCUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 163844 0.75 0.251804
Target:  5'- aGUCGcCGGCagCGGCCGCCGgCGaggGCCCUCg -3'
miRNA:   3'- -CAGCaGCCG--GCUGGCGGC-GC---UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 63178 0.75 0.257327
Target:  5'- cUCG-CGGCgCGGCCGgCGCGGCCUCg -3'
miRNA:   3'- cAGCaGCCG-GCUGGCgGCGCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 124415 0.74 0.280416
Target:  5'- cGUCGUCGGgCGACacguGCUGCGGCCgCg -3'
miRNA:   3'- -CAGCAGCCgGCUGg---CGGCGCUGGgGg -5'
29806 3' -64.1 NC_006273.1 + 92966 0.74 0.286439
Target:  5'- --aGUCGGCCuccACCGCCGUGGCggauuccuCCCCg -3'
miRNA:   3'- cagCAGCCGGc--UGGCGGCGCUG--------GGGG- -5'
29806 3' -64.1 NC_006273.1 + 94463 0.73 0.30512
Target:  5'- -cCGaCGGcCCGGCCggGCUGgGACCCCCg -3'
miRNA:   3'- caGCaGCC-GGCUGG--CGGCgCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 179250 0.73 0.311551
Target:  5'- -gCGUCGGUCG-CCGCCuccGCGGCCCg- -3'
miRNA:   3'- caGCAGCCGGCuGGCGG---CGCUGGGgg -5'
29806 3' -64.1 NC_006273.1 + 68053 0.73 0.311551
Target:  5'- ---cUCGGCCagcGCCGCCGUGGCCgCCg -3'
miRNA:   3'- cagcAGCCGGc--UGGCGGCGCUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 153358 0.73 0.318085
Target:  5'- uUCGUCcgaGGCCGGCgGCacgCGCGugCCCUg -3'
miRNA:   3'- cAGCAG---CCGGCUGgCG---GCGCugGGGG- -5'
29806 3' -64.1 NC_006273.1 + 46466 0.73 0.324721
Target:  5'- --gGUCGGCUGgacACCGCCgGUGACgCCCa -3'
miRNA:   3'- cagCAGCCGGC---UGGCGG-CGCUGgGGG- -5'
29806 3' -64.1 NC_006273.1 + 171125 0.73 0.345244
Target:  5'- -cCGcuUCGGCCG-CCGCCGCaACgCCCg -3'
miRNA:   3'- caGC--AGCCGGCuGGCGGCGcUGgGGG- -5'
29806 3' -64.1 NC_006273.1 + 67724 0.72 0.352288
Target:  5'- -aCGgCGGCCGAccCCGCCguuGCGGCCgCCg -3'
miRNA:   3'- caGCaGCCGGCU--GGCGG---CGCUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 23555 0.72 0.352288
Target:  5'- uUCGUCGGCCGACC-CCGUcACUgUCg -3'
miRNA:   3'- cAGCAGCCGGCUGGcGGCGcUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 64832 0.71 0.396658
Target:  5'- aGUCGcgguUCGGCCgGACCGUgcacgcgcucuCGCGGCCUUCa -3'
miRNA:   3'- -CAGC----AGCCGG-CUGGCG-----------GCGCUGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.