miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 3' -64.1 NC_006273.1 + 64832 0.71 0.396658
Target:  5'- aGUCGcgguUCGGCCgGACCGUgcacgcgcucuCGCGGCCUUCa -3'
miRNA:   3'- -CAGC----AGCCGG-CUGGCG-----------GCGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 38535 0.71 0.396658
Target:  5'- cGUCGcCGGCC--CCGCCGCGcaACCCagCCa -3'
miRNA:   3'- -CAGCaGCCGGcuGGCGGCGC--UGGG--GG- -5'
29806 3' -64.1 NC_006273.1 + 68198 0.71 0.412227
Target:  5'- -aCGcCGGCCuccgcGGCCGCUGCG-CCCgCCg -3'
miRNA:   3'- caGCaGCCGG-----CUGGCGGCGCuGGG-GG- -5'
29806 3' -64.1 NC_006273.1 + 83386 0.71 0.412227
Target:  5'- -aCGUCGGgCuGCUGCCGCcGCCaCCCg -3'
miRNA:   3'- caGCAGCCgGcUGGCGGCGcUGG-GGG- -5'
29806 3' -64.1 NC_006273.1 + 75261 0.71 0.420151
Target:  5'- -gCGcUGGCCG-CCGCgGCGGCCgCCu -3'
miRNA:   3'- caGCaGCCGGCuGGCGgCGCUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 17181 0.71 0.420151
Target:  5'- -aUGcCGGUCGuCCGCCGuCGGCCgCCg -3'
miRNA:   3'- caGCaGCCGGCuGGCGGC-GCUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 202151 0.71 0.428167
Target:  5'- cGUCGUC-GCCG-CC-CCGgGGCCCUCg -3'
miRNA:   3'- -CAGCAGcCGGCuGGcGGCgCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 198144 0.71 0.428167
Target:  5'- cGUCGUC-GCCG-CCGUCGCGcCUUCCu -3'
miRNA:   3'- -CAGCAGcCGGCuGGCGGCGCuGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 164437 0.71 0.436273
Target:  5'- cGUCGUCGuCUG-CgGCCGCGGCCgCUCg -3'
miRNA:   3'- -CAGCAGCcGGCuGgCGGCGCUGG-GGG- -5'
29806 3' -64.1 NC_006273.1 + 77157 0.71 0.436273
Target:  5'- cGUCGcCGGCCGACgCGCgccCGCG-CCUCa -3'
miRNA:   3'- -CAGCaGCCGGCUG-GCG---GCGCuGGGGg -5'
29806 3' -64.1 NC_006273.1 + 201139 0.71 0.436273
Target:  5'- cUCaUCGGCCGcuGCCuGCCgGCGGCCCUg -3'
miRNA:   3'- cAGcAGCCGGC--UGG-CGG-CGCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 153779 0.7 0.444467
Target:  5'- -cCGcuUCGGCCu-CCGCCGCGGCCgCg -3'
miRNA:   3'- caGC--AGCCGGcuGGCGGCGCUGGgGg -5'
29806 3' -64.1 NC_006273.1 + 116887 0.7 0.444467
Target:  5'- -aCGUUGGCCGugUacgGgCGCGAUCCCg -3'
miRNA:   3'- caGCAGCCGGCugG---CgGCGCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 87878 0.7 0.452746
Target:  5'- -cCGagCGaGCgGGCCGCCGCuaucgccauGGCCCCCu -3'
miRNA:   3'- caGCa-GC-CGgCUGGCGGCG---------CUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 119879 0.7 0.461109
Target:  5'- uUCG-CGGCCGauuuucuucGCCGCCGCG-CCgCUg -3'
miRNA:   3'- cAGCaGCCGGC---------UGGCGGCGCuGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 170553 0.7 0.461109
Target:  5'- -gCGUgcaCGGuCCGGCCGaaCCGCGACUCCa -3'
miRNA:   3'- caGCA---GCC-GGCUGGC--GGCGCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 46327 0.7 0.461109
Target:  5'- --aG-CGGCCGccuacGCCGCCGguccgGGCCCCCa -3'
miRNA:   3'- cagCaGCCGGC-----UGGCGGCg----CUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 61570 0.7 0.461109
Target:  5'- cUCGUCGGCCGggucgcGCgGCCGUuuGGCCaCCg -3'
miRNA:   3'- cAGCAGCCGGC------UGgCGGCG--CUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 95304 0.7 0.469552
Target:  5'- gGUCGaCGGUgGGCCGCCaUGACaCCUCa -3'
miRNA:   3'- -CAGCaGCCGgCUGGCGGcGCUG-GGGG- -5'
29806 3' -64.1 NC_006273.1 + 191483 0.7 0.469552
Target:  5'- --aGUCGGCgCcGCCGCCGCuugGACCUUCg -3'
miRNA:   3'- cagCAGCCG-GcUGGCGGCG---CUGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.