miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 3' -64.1 NC_006273.1 + 231719 0.7 0.477218
Target:  5'- -gCGUCGGCauGCCGCUgaucgcaGUGGCCCCa -3'
miRNA:   3'- caGCAGCCGgcUGGCGG-------CGCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 132362 0.7 0.486671
Target:  5'- -cCG-CGGCCGcuGCCGCCGCGGCgUUUCg -3'
miRNA:   3'- caGCaGCCGGC--UGGCGGCGCUG-GGGG- -5'
29806 3' -64.1 NC_006273.1 + 161652 0.7 0.486671
Target:  5'- ---cUCGGCCG-CCGCCGCcACCCa- -3'
miRNA:   3'- cagcAGCCGGCuGGCGGCGcUGGGgg -5'
29806 3' -64.1 NC_006273.1 + 233357 0.7 0.486671
Target:  5'- aUCGcgcaCGGCgCGuccCCGCCgGCGGCCUCCg -3'
miRNA:   3'- cAGCa---GCCG-GCu--GGCGG-CGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 38464 0.7 0.486671
Target:  5'- aUCGcgcaCGGCgCGuccCCGCCgGCGGCCUCCg -3'
miRNA:   3'- cAGCa---GCCG-GCu--GGCGG-CGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 114208 0.7 0.486671
Target:  5'- -aUGUCGGCCGAUCGC-GCcGCCUCg -3'
miRNA:   3'- caGCAGCCGGCUGGCGgCGcUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 171202 0.7 0.49013
Target:  5'- cUCGUCGcuuccgucagacagaGCUGugCGCCGCGGCgUUCCa -3'
miRNA:   3'- cAGCAGC---------------CGGCugGCGGCGCUG-GGGG- -5'
29806 3' -64.1 NC_006273.1 + 13588 0.7 0.495341
Target:  5'- -cCGggCGGCCcgGGCCGCCGUGcuggagggccGCCCCa -3'
miRNA:   3'- caGCa-GCCGG--CUGGCGGCGC----------UGGGGg -5'
29806 3' -64.1 NC_006273.1 + 38312 0.7 0.495341
Target:  5'- -cCGUCGGC--GCCGCCGCuGCUgCCg -3'
miRNA:   3'- caGCAGCCGgcUGGCGGCGcUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 233205 0.7 0.495341
Target:  5'- -cCGUCGGC--GCCGCCGCuGCUgCCg -3'
miRNA:   3'- caGCAGCCGgcUGGCGGCGcUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 227023 0.7 0.495341
Target:  5'- -aCGaUGGCCGcacagacccuaGCCGuuGCGAUCCCUa -3'
miRNA:   3'- caGCaGCCGGC-----------UGGCggCGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 227692 0.69 0.50408
Target:  5'- -cCG-CGGCC-ACUGCCGCcGCCgCCCa -3'
miRNA:   3'- caGCaGCCGGcUGGCGGCGcUGG-GGG- -5'
29806 3' -64.1 NC_006273.1 + 194839 0.69 0.50408
Target:  5'- gGUgGUaGGUCGACCGCCcuCGGUCCCCg -3'
miRNA:   3'- -CAgCAgCCGGCUGGCGGc-GCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 117044 0.69 0.50408
Target:  5'- cGUCGagGGcCCGGCCGuuGCcGCCUCa -3'
miRNA:   3'- -CAGCagCC-GGCUGGCggCGcUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 183789 0.69 0.512885
Target:  5'- -gUGUCGGaagaagaccCCGcuGCCGCCGCcACCCCUc -3'
miRNA:   3'- caGCAGCC---------GGC--UGGCGGCGcUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 189877 0.69 0.512885
Target:  5'- -gCGUCgGGCgGACCGCCGgGcAUCgCCg -3'
miRNA:   3'- caGCAG-CCGgCUGGCGGCgC-UGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 46219 0.69 0.512885
Target:  5'- --aGcCaGCCaGACCucugugcgagucGCCGCGACCCCCu -3'
miRNA:   3'- cagCaGcCGG-CUGG------------CGGCGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 173343 0.69 0.512885
Target:  5'- --aGUCcGCCG-CCGCCGCGguGCCgCCg -3'
miRNA:   3'- cagCAGcCGGCuGGCGGCGC--UGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 90617 0.69 0.512885
Target:  5'- -gCGa-GGCCacGGCCGCCGCGucguGCCUCCg -3'
miRNA:   3'- caGCagCCGG--CUGGCGGCGC----UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 34692 0.69 0.521753
Target:  5'- -gCGcCGGCguuuuccuuuucUGACCGCCgGCGGCCgCCa -3'
miRNA:   3'- caGCaGCCG------------GCUGGCGG-CGCUGGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.