miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 3' -64.1 NC_006273.1 + 79477 0.66 0.696128
Target:  5'- uUCGcgcaCGGCaCG-CCGCUGCGAaaCCCa -3'
miRNA:   3'- cAGCa---GCCG-GCuGGCGGCGCUggGGG- -5'
29806 3' -64.1 NC_006273.1 + 71542 0.66 0.696128
Target:  5'- cUCGccggCGGCCG-CUGCCGgCGACUUgCg -3'
miRNA:   3'- cAGCa---GCCGGCuGGCGGC-GCUGGGgG- -5'
29806 3' -64.1 NC_006273.1 + 158753 0.66 0.696128
Target:  5'- gGUCGggUCGcGCCaGugCGCCGuCGACgCCg -3'
miRNA:   3'- -CAGC--AGC-CGG-CugGCGGC-GCUGgGGg -5'
29806 3' -64.1 NC_006273.1 + 72664 0.66 0.696128
Target:  5'- cUCGUUcuuGCCG-CCGCCGCcauGGCCUUCg -3'
miRNA:   3'- cAGCAGc--CGGCuGGCGGCG---CUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 23324 0.66 0.696128
Target:  5'- -cCGggaCGGCCuGGgCGCCcccacccccGCGACCCUCg -3'
miRNA:   3'- caGCa--GCCGG-CUgGCGG---------CGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 89590 0.66 0.696128
Target:  5'- cGUCGUgggUGGCCucgcgguGGCUGCCGCuacuacugucguuuCCCCCg -3'
miRNA:   3'- -CAGCA---GCCGG-------CUGGCGGCGcu------------GGGGG- -5'
29806 3' -64.1 NC_006273.1 + 25087 0.66 0.686978
Target:  5'- -aCGUCGGUU-ACCG-CGUG-CCCCCg -3'
miRNA:   3'- caGCAGCCGGcUGGCgGCGCuGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 94667 0.66 0.686978
Target:  5'- -gCGcCGGCCccGCCGCCGCcACCacuaCCa -3'
miRNA:   3'- caGCaGCCGGc-UGGCGGCGcUGGg---GG- -5'
29806 3' -64.1 NC_006273.1 + 24086 0.66 0.686978
Target:  5'- aUCGUCacgcgccaccggGGCC-ACCaaCGCGGCCUCCa -3'
miRNA:   3'- cAGCAG------------CCGGcUGGcgGCGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 145404 0.66 0.686978
Target:  5'- aGUUGcUGGCCGGCgGUCGCGuuUUCCa -3'
miRNA:   3'- -CAGCaGCCGGCUGgCGGCGCugGGGG- -5'
29806 3' -64.1 NC_006273.1 + 83644 0.66 0.686978
Target:  5'- uGUUGgaGGCCGugCGCaaggcgcgcgaCGCGGCgCCCu -3'
miRNA:   3'- -CAGCagCCGGCugGCG-----------GCGCUGgGGG- -5'
29806 3' -64.1 NC_006273.1 + 128525 0.66 0.686978
Target:  5'- -cUGUCG--CGGCUGCCGCG-CUCCCg -3'
miRNA:   3'- caGCAGCcgGCUGGCGGCGCuGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 130508 0.66 0.68606
Target:  5'- ---cUCGGCCGcCgGCCGCGugugaggcaaacaGCCCuCCg -3'
miRNA:   3'- cagcAGCCGGCuGgCGGCGC-------------UGGG-GG- -5'
29806 3' -64.1 NC_006273.1 + 113476 0.66 0.684225
Target:  5'- -aCGUUGGCCGACCugcuggguucggauGCCGUaGCCggcggcggguugCCCg -3'
miRNA:   3'- caGCAGCCGGCUGG--------------CGGCGcUGG------------GGG- -5'
29806 3' -64.1 NC_006273.1 + 19881 0.66 0.683307
Target:  5'- cGUUGaccUGGaCCGACCGCCGCuuuggucuggaucGCUCCCg -3'
miRNA:   3'- -CAGCa--GCC-GGCUGGCGGCGc------------UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 33465 0.66 0.67779
Target:  5'- cGUC-UCGGUuuucuguugaugUGugCGuuGcCGACCCCCg -3'
miRNA:   3'- -CAGcAGCCG------------GCugGCggC-GCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 96055 0.66 0.67779
Target:  5'- aGUCG-CGGgC-ACCGCCuCGguACCCCCu -3'
miRNA:   3'- -CAGCaGCCgGcUGGCGGcGC--UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 184715 0.66 0.67779
Target:  5'- uUCGUCgGGCCGGCUGa-GCGuCUCCa -3'
miRNA:   3'- cAGCAG-CCGGCUGGCggCGCuGGGGg -5'
29806 3' -64.1 NC_006273.1 + 123146 0.66 0.67779
Target:  5'- cGUCcUCGcgccagcccccGCCGcgcauugccACCGCCGCGuCCUCCa -3'
miRNA:   3'- -CAGcAGC-----------CGGC---------UGGCGGCGCuGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 99316 0.66 0.67779
Target:  5'- cGUCGUCGGa-GGCCGgUGCGucgUCCUCa -3'
miRNA:   3'- -CAGCAGCCggCUGGCgGCGCu--GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.