Results 41 - 60 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29806 | 3' | -64.1 | NC_006273.1 | + | 137963 | 0.67 | 0.668571 |
Target: 5'- cGUCGUCGGUC--UCGa-GCGcCCCCCg -3' miRNA: 3'- -CAGCAGCCGGcuGGCggCGCuGGGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 133646 | 0.67 | 0.668571 |
Target: 5'- -cCGcCGG-CGACCGCCGUcuGAgCCUCa -3' miRNA: 3'- caGCaGCCgGCUGGCGGCG--CUgGGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 8019 | 0.67 | 0.668571 |
Target: 5'- aGUCGaUCGGCCucGACgaacgagaCGCgGCGACgCCUCu -3' miRNA: 3'- -CAGC-AGCCGG--CUG--------GCGgCGCUG-GGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 32285 | 0.67 | 0.668571 |
Target: 5'- -aCGagCGGgaCCGucACCGUCGCGACCgCCg -3' miRNA: 3'- caGCa-GCC--GGC--UGGCGGCGCUGGgGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 216858 | 0.67 | 0.668571 |
Target: 5'- uGUgGUCaaaaGGCCGGCagGCgCGCaGGCCCUCg -3' miRNA: 3'- -CAgCAG----CCGGCUGg-CG-GCG-CUGGGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 76618 | 0.67 | 0.668571 |
Target: 5'- -gCGUCcguGGCCG-CgGCCgGCGGCCUCUu -3' miRNA: 3'- caGCAG---CCGGCuGgCGG-CGCUGGGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 192356 | 0.67 | 0.667648 |
Target: 5'- cGUUGcgCGGCCGugGCgCGUCGCGGCUacacuuaCCCg -3' miRNA: 3'- -CAGCa-GCCGGC--UG-GCGGCGCUGG-------GGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 140341 | 0.67 | 0.659328 |
Target: 5'- -cCGgCGGCUaGGCCGa-GgGACCCCCg -3' miRNA: 3'- caGCaGCCGG-CUGGCggCgCUGGGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 143144 | 0.67 | 0.659328 |
Target: 5'- -cCGUCuuucaggagacgGGCaCGGCgCGCCGC-AUCCCCa -3' miRNA: 3'- caGCAG------------CCG-GCUG-GCGGCGcUGGGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 71597 | 0.67 | 0.659328 |
Target: 5'- cUCGUccucauggCGGuuGuuucuCCGUCGCGAUCUCCg -3' miRNA: 3'- cAGCA--------GCCggCu----GGCGGCGCUGGGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 87796 | 0.67 | 0.658403 |
Target: 5'- -gCGuUUGGCCGGcaauaacCCGCUGCcccgccGCCCCCg -3' miRNA: 3'- caGC-AGCCGGCU-------GGCGGCGc-----UGGGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 112511 | 0.67 | 0.656551 |
Target: 5'- --aGUCGGCaCGAugccaucacgggacCCGUCGCcGCCCCg -3' miRNA: 3'- cagCAGCCG-GCU--------------GGCGGCGcUGGGGg -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 1615 | 0.67 | 0.653773 |
Target: 5'- gGUgGUgCGGCUGuACCGCUGCaaccggcugggcgugGGCaCCCCg -3' miRNA: 3'- -CAgCA-GCCGGC-UGGCGGCG---------------CUG-GGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 196508 | 0.67 | 0.653773 |
Target: 5'- gGUgGUgCGGCUGuACCGCUGCaaccggcugggcgugGGCaCCCCg -3' miRNA: 3'- -CAgCA-GCCGGC-UGGCGGCG---------------CUG-GGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 154217 | 0.67 | 0.650067 |
Target: 5'- -aCGU-GGCCuacgugGACCGCUucguGCGGCCgCCCa -3' miRNA: 3'- caGCAgCCGG------CUGGCGG----CGCUGG-GGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 217972 | 0.67 | 0.650067 |
Target: 5'- cGUCGUCaucgcucucguGGCCGGCgGCCauacgcGCGGCaaccgcgucuuCCCCu -3' miRNA: 3'- -CAGCAG-----------CCGGCUGgCGG------CGCUG-----------GGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 204620 | 0.67 | 0.650067 |
Target: 5'- aUCGUC-GCC-ACCGCCGCcGGCgCCg -3' miRNA: 3'- cAGCAGcCGGcUGGCGGCG-CUGgGGg -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 86967 | 0.67 | 0.650067 |
Target: 5'- cUCGUCGGUC-ACUGCCaCGGCCacgaaaCCg -3' miRNA: 3'- cAGCAGCCGGcUGGCGGcGCUGGg-----GG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 4911 | 0.67 | 0.640795 |
Target: 5'- --aGcCGGCCGAuucgcCCGCCGgGGCUUCUg -3' miRNA: 3'- cagCaGCCGGCU-----GGCGGCgCUGGGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 194170 | 0.67 | 0.640795 |
Target: 5'- -cCGUCuguguuccCCGuguCCGCCGCGaaagGCCCCCg -3' miRNA: 3'- caGCAGcc------GGCu--GGCGGCGC----UGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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