miRNA display CGI


Results 61 - 80 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 3' -64.1 NC_006273.1 + 118448 0.67 0.640795
Target:  5'- -cCGUcaCGGUCGGCCGCCGUGAggUCUg -3'
miRNA:   3'- caGCA--GCCGGCUGGCGGCGCUggGGG- -5'
29806 3' -64.1 NC_006273.1 + 199482 0.67 0.640795
Target:  5'- gGUCGUUGGCUc-CCGCUGUgcuGGCCgCCg -3'
miRNA:   3'- -CAGCAGCCGGcuGGCGGCG---CUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 234108 0.67 0.640795
Target:  5'- -cCGUCuguguuccCCGuguCCGCCGCGaaagGCCCCCg -3'
miRNA:   3'- caGCAGcc------GGCu--GGCGGCGC----UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 219725 0.67 0.640795
Target:  5'- cGUCGUCaccaGGCaGugCaGCCGCGGgCCCg -3'
miRNA:   3'- -CAGCAG----CCGgCugG-CGGCGCUgGGGg -5'
29806 3' -64.1 NC_006273.1 + 194170 0.67 0.640795
Target:  5'- -cCGUCuguguuccCCGuguCCGCCGCGaaagGCCCCCg -3'
miRNA:   3'- caGCAGcc------GGCu--GGCGGCGC----UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 4911 0.67 0.640795
Target:  5'- --aGcCGGCCGAuucgcCCGCCGgGGCUUCUg -3'
miRNA:   3'- cagCaGCCGGCU-----GGCGGCgCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 33102 0.67 0.639867
Target:  5'- cUCGUCGGUcgaugaccccaCGgugcuuauaacgcGCCGCCGCGGCUUCa -3'
miRNA:   3'- cAGCAGCCG-----------GC-------------UGGCGGCGCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 94385 0.67 0.631517
Target:  5'- -cCGUgGGCCGggcACCgGgCGCGGCCCgCu -3'
miRNA:   3'- caGCAgCCGGC---UGG-CgGCGCUGGGgG- -5'
29806 3' -64.1 NC_006273.1 + 213894 0.67 0.631517
Target:  5'- cGUCGUUGuguaacacCUGACCGCUGCGugCgUCCa -3'
miRNA:   3'- -CAGCAGCc-------GGCUGGCGGCGCugG-GGG- -5'
29806 3' -64.1 NC_006273.1 + 195759 0.67 0.625949
Target:  5'- cGUCGgagguguccggCGGCCauggcccagcgcaacGGCauguCGCCGCGcCCCCCg -3'
miRNA:   3'- -CAGCa----------GCCGG---------------CUG----GCGGCGCuGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 867 0.67 0.625949
Target:  5'- cGUCGgagguguccggCGGCCauggcccagcgcaacGGCauguCGCCGCGcCCCCCg -3'
miRNA:   3'- -CAGCa----------GCCGG---------------CUG----GCGGCGCuGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 133730 0.67 0.622239
Target:  5'- -gCGUUGGCCGaguagcguGCCGUCGUG-CCUUCg -3'
miRNA:   3'- caGCAGCCGGC--------UGGCGGCGCuGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 148846 0.67 0.622239
Target:  5'- cGUCGcUGGCUGuuGCCGCCGCuGCCgCg -3'
miRNA:   3'- -CAGCaGCCGGC--UGGCGGCGcUGGgGg -5'
29806 3' -64.1 NC_006273.1 + 84609 0.67 0.622239
Target:  5'- ---uUCGGCCGGCUGCUGCaccacaGCgCCCg -3'
miRNA:   3'- cagcAGCCGGCUGGCGGCGc-----UGgGGG- -5'
29806 3' -64.1 NC_006273.1 + 158267 0.67 0.622239
Target:  5'- gGUUGUUGGCCGACguagCGCCGUucaccguuGACgCCa -3'
miRNA:   3'- -CAGCAGCCGGCUG----GCGGCG--------CUGgGGg -5'
29806 3' -64.1 NC_006273.1 + 204717 0.67 0.622239
Target:  5'- -cCG-CGGCCGGCCGCagGaaGCCgCCCg -3'
miRNA:   3'- caGCaGCCGGCUGGCGg-CgcUGG-GGG- -5'
29806 3' -64.1 NC_006273.1 + 147812 0.67 0.622239
Target:  5'- gGUgG-CGGCCGugCcgaGCCGCGGCUUCa -3'
miRNA:   3'- -CAgCaGCCGGCugG---CGGCGCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 205499 0.68 0.616675
Target:  5'- uGUUGUC-GCCggaucagcagaagaaGACCGCUGUGugCCUCa -3'
miRNA:   3'- -CAGCAGcCGG---------------CUGGCGGCGCugGGGG- -5'
29806 3' -64.1 NC_006273.1 + 103029 0.68 0.612967
Target:  5'- -cCG-CGGCgGcaGCgGCCGCGGCUUCCa -3'
miRNA:   3'- caGCaGCCGgC--UGgCGGCGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 113611 0.68 0.612967
Target:  5'- aUCG--GGCCGugguaCGCgCGCGACCCCg -3'
miRNA:   3'- cAGCagCCGGCug---GCG-GCGCUGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.