miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 3' -64.1 NC_006273.1 + 677 0.66 0.71429
Target:  5'- cGUCGUCGGCUG-CCGggugguuuuCCaCGGCCUUCc -3'
miRNA:   3'- -CAGCAGCCGGCuGGC---------GGcGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 867 0.67 0.625949
Target:  5'- cGUCGgagguguccggCGGCCauggcccagcgcaacGGCauguCGCCGCGcCCCCCg -3'
miRNA:   3'- -CAGCa----------GCCGG---------------CUG----GCGGCGCuGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 1615 0.67 0.653773
Target:  5'- gGUgGUgCGGCUGuACCGCUGCaaccggcugggcgugGGCaCCCCg -3'
miRNA:   3'- -CAgCA-GCCGGC-UGGCGGCG---------------CUG-GGGG- -5'
29806 3' -64.1 NC_006273.1 + 4911 0.67 0.640795
Target:  5'- --aGcCGGCCGAuucgcCCGCCGgGGCUUCUg -3'
miRNA:   3'- cagCaGCCGGCU-----GGCGGCgCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 8019 0.67 0.668571
Target:  5'- aGUCGaUCGGCCucGACgaacgagaCGCgGCGACgCCUCu -3'
miRNA:   3'- -CAGC-AGCCGG--CUG--------GCGgCGCUG-GGGG- -5'
29806 3' -64.1 NC_006273.1 + 13588 0.7 0.495341
Target:  5'- -cCGggCGGCCcgGGCCGCCGUGcuggagggccGCCCCa -3'
miRNA:   3'- caGCa-GCCGG--CUGGCGGCGC----------UGGGGg -5'
29806 3' -64.1 NC_006273.1 + 17181 0.71 0.420151
Target:  5'- -aUGcCGGUCGuCCGCCGuCGGCCgCCg -3'
miRNA:   3'- caGCaGCCGGCuGGCGGC-GCUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 19881 0.66 0.683307
Target:  5'- cGUUGaccUGGaCCGACCGCCGCuuuggucuggaucGCUCCCg -3'
miRNA:   3'- -CAGCa--GCC-GGCUGGCGGCGc------------UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 21214 0.69 0.530679
Target:  5'- gGUgGcCGGCUGccGCCGCUGUGGCUgCCg -3'
miRNA:   3'- -CAgCaGCCGGC--UGGCGGCGCUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 22315 0.66 0.71429
Target:  5'- -gCGgcagCGGCgccaaCGAaCGCCGCGACUCCg -3'
miRNA:   3'- caGCa---GCCG-----GCUgGCGGCGCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 23324 0.66 0.696128
Target:  5'- -cCGggaCGGCCuGGgCGCCcccacccccGCGACCCUCg -3'
miRNA:   3'- caGCa--GCCGG-CUgGCGG---------CGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 23555 0.72 0.352288
Target:  5'- uUCGUCGGCCGACC-CCGUcACUgUCg -3'
miRNA:   3'- cAGCAGCCGGCUGGcGGCGcUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 23668 0.68 0.603707
Target:  5'- -aCGUCGcGCU--CCG-UGCGGCCCCCa -3'
miRNA:   3'- caGCAGC-CGGcuGGCgGCGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 24086 0.66 0.686978
Target:  5'- aUCGUCacgcgccaccggGGCC-ACCaaCGCGGCCUCCa -3'
miRNA:   3'- cAGCAG------------CCGGcUGGcgGCGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 25087 0.66 0.686978
Target:  5'- -aCGUCGGUU-ACCG-CGUG-CCCCCg -3'
miRNA:   3'- caGCAGCCGGcUGGCgGCGCuGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 31395 0.69 0.530679
Target:  5'- aUCG-CGGCaCGcccgaAUCGCCGCGGCUCaCCg -3'
miRNA:   3'- cAGCaGCCG-GC-----UGGCGGCGCUGGG-GG- -5'
29806 3' -64.1 NC_006273.1 + 32285 0.67 0.668571
Target:  5'- -aCGagCGGgaCCGucACCGUCGCGACCgCCg -3'
miRNA:   3'- caGCa-GCC--GGC--UGGCGGCGCUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 32832 0.68 0.557773
Target:  5'- -cCGUCGGCCGccacgccgGCCacGCUGCGGUCCCa -3'
miRNA:   3'- caGCAGCCGGC--------UGG--CGGCGCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 33102 0.67 0.639867
Target:  5'- cUCGUCGGUcgaugaccccaCGgugcuuauaacgcGCCGCCGCGGCUUCa -3'
miRNA:   3'- cAGCAGCCG-----------GC-------------UGGCGGCGCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 33465 0.66 0.67779
Target:  5'- cGUC-UCGGUuuucuguugaugUGugCGuuGcCGACCCCCg -3'
miRNA:   3'- -CAGcAGCCG------------GCugGCggC-GCUGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.