miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 3' -64.1 NC_006273.1 + 34692 0.69 0.521753
Target:  5'- -gCGcCGGCguuuuccuuuucUGACCGCCgGCGGCCgCCa -3'
miRNA:   3'- caGCaGCCG------------GCUGGCGG-CGCUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 38312 0.7 0.495341
Target:  5'- -cCGUCGGC--GCCGCCGCuGCUgCCg -3'
miRNA:   3'- caGCAGCCGgcUGGCGGCGcUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 38464 0.7 0.486671
Target:  5'- aUCGcgcaCGGCgCGuccCCGCCgGCGGCCUCCg -3'
miRNA:   3'- cAGCa---GCCG-GCu--GGCGG-CGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 38535 0.71 0.396658
Target:  5'- cGUCGcCGGCC--CCGCCGCGcaACCCagCCa -3'
miRNA:   3'- -CAGCaGCCGGcuGGCGGCGC--UGGG--GG- -5'
29806 3' -64.1 NC_006273.1 + 38754 0.75 0.235818
Target:  5'- cGUCGUgcCGGCCcACCGCCgGCGcaGCUCCCg -3'
miRNA:   3'- -CAGCA--GCCGGcUGGCGG-CGC--UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 40350 0.69 0.530679
Target:  5'- cGUCGagCGGCgUGAUugcaaaGCCGCGcucGCCCCCg -3'
miRNA:   3'- -CAGCa-GCCG-GCUGg-----CGGCGC---UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 40491 0.68 0.603707
Target:  5'- gGUCGaggCGGcCCGGCUGCUgccggacagGCGACCCg- -3'
miRNA:   3'- -CAGCa--GCC-GGCUGGCGG---------CGCUGGGgg -5'
29806 3' -64.1 NC_006273.1 + 42849 0.69 0.521753
Target:  5'- -cCGUCuGGCCGAUgGCUGUGACCa-- -3'
miRNA:   3'- caGCAG-CCGGCUGgCGGCGCUGGggg -5'
29806 3' -64.1 NC_006273.1 + 45350 0.68 0.603707
Target:  5'- -gCG-CGcGCCGGCCGaaCUG-GACCCCCa -3'
miRNA:   3'- caGCaGC-CGGCUGGC--GGCgCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 46219 0.69 0.512885
Target:  5'- --aGcCaGCCaGACCucugugcgagucGCCGCGACCCCCu -3'
miRNA:   3'- cagCaGcCGG-CUGG------------CGGCGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 46327 0.7 0.461109
Target:  5'- --aG-CGGCCGccuacGCCGCCGguccgGGCCCCCa -3'
miRNA:   3'- cagCaGCCGGC-----UGGCGGCg----CUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 46362 0.69 0.548694
Target:  5'- -aCG-CGGCUG-UCGUCGCacaGGCCCCCg -3'
miRNA:   3'- caGCaGCCGGCuGGCGGCG---CUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 46466 0.73 0.324721
Target:  5'- --gGUCGGCUGgacACCGCCgGUGACgCCCa -3'
miRNA:   3'- cagCAGCCGGC---UGGCGG-CGCUGgGGG- -5'
29806 3' -64.1 NC_006273.1 + 47037 0.69 0.529784
Target:  5'- -aCGUCGcaaCCGACCGuuGCGcugccucACCUCCa -3'
miRNA:   3'- caGCAGCc--GGCUGGCggCGC-------UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 53180 0.66 0.723288
Target:  5'- --gGUCGGCUGACCGaCCGCauuGACgCa- -3'
miRNA:   3'- cagCAGCCGGCUGGC-GGCG---CUGgGgg -5'
29806 3' -64.1 NC_006273.1 + 55456 0.69 0.539661
Target:  5'- aGUCGggcggUGGCCGGCaCGCCGC-AUUUCCu -3'
miRNA:   3'- -CAGCa----GCCGGCUG-GCGGCGcUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 56507 0.69 0.543268
Target:  5'- -aCGUCGccacgucucgagaauGCCGGCC-CCGCGGggUCCCCu -3'
miRNA:   3'- caGCAGC---------------CGGCUGGcGGCGCU--GGGGG- -5'
29806 3' -64.1 NC_006273.1 + 56723 0.68 0.594465
Target:  5'- gGUCGUgcuucuuGCCGccACCGCCGCcACCUCCu -3'
miRNA:   3'- -CAGCAgc-----CGGC--UGGCGGCGcUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 60040 0.77 0.188598
Target:  5'- -cCGcCuGGCUGACCGCCcaaCGACCCCCg -3'
miRNA:   3'- caGCaG-CCGGCUGGCGGc--GCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 61570 0.7 0.461109
Target:  5'- cUCGUCGGCCGggucgcGCgGCCGUuuGGCCaCCg -3'
miRNA:   3'- cAGCAGCCGGC------UGgCGGCG--CUGGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.