miRNA display CGI


Results 41 - 60 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 3' -64.1 NC_006273.1 + 62086 0.66 0.71429
Target:  5'- -gCGUCGaCCGAgCGCCGCGGCa--- -3'
miRNA:   3'- caGCAGCcGGCUgGCGGCGCUGgggg -5'
29806 3' -64.1 NC_006273.1 + 63178 0.75 0.257327
Target:  5'- cUCG-CGGCgCGGCCGgCGCGGCCUCg -3'
miRNA:   3'- cAGCaGCCG-GCUGGCgGCGCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 64324 0.69 0.539661
Target:  5'- ---aUCGGCgCcccaACCGCCGCGACUCCg -3'
miRNA:   3'- cagcAGCCG-Gc---UGGCGGCGCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 64832 0.71 0.396658
Target:  5'- aGUCGcgguUCGGCCgGACCGUgcacgcgcucuCGCGGCCUUCa -3'
miRNA:   3'- -CAGC----AGCCGG-CUGGCG-----------GCGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 67724 0.72 0.352288
Target:  5'- -aCGgCGGCCGAccCCGCCguuGCGGCCgCCg -3'
miRNA:   3'- caGCaGCCGGCU--GGCGG---CGCUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 67936 0.68 0.576053
Target:  5'- gGUCGaUCGGCaaaccguacUGACCGCCgagaGCGcGCCCgCCa -3'
miRNA:   3'- -CAGC-AGCCG---------GCUGGCGG----CGC-UGGG-GG- -5'
29806 3' -64.1 NC_006273.1 + 68053 0.73 0.311551
Target:  5'- ---cUCGGCCagcGCCGCCGUGGCCgCCg -3'
miRNA:   3'- cagcAGCCGGc--UGGCGGCGCUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 68198 0.71 0.412227
Target:  5'- -aCGcCGGCCuccgcGGCCGCUGCG-CCCgCCg -3'
miRNA:   3'- caGCaGCCGG-----CUGGCGGCGCuGGG-GG- -5'
29806 3' -64.1 NC_006273.1 + 70846 0.78 0.160682
Target:  5'- -----gGGCCGACCGCCGCGcCCUCCc -3'
miRNA:   3'- cagcagCCGGCUGGCGGCGCuGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 71542 0.66 0.696128
Target:  5'- cUCGccggCGGCCG-CUGCCGgCGACUUgCg -3'
miRNA:   3'- cAGCa---GCCGGCuGGCGGC-GCUGGGgG- -5'
29806 3' -64.1 NC_006273.1 + 71597 0.67 0.659328
Target:  5'- cUCGUccucauggCGGuuGuuucuCCGUCGCGAUCUCCg -3'
miRNA:   3'- cAGCA--------GCCggCu----GGCGGCGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 72608 0.68 0.594465
Target:  5'- -aUG-CGGCCGcuGCCGCCGCcACCaCCa -3'
miRNA:   3'- caGCaGCCGGC--UGGCGGCGcUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 72664 0.66 0.696128
Target:  5'- cUCGUUcuuGCCG-CCGCCGCcauGGCCUUCg -3'
miRNA:   3'- cAGCAGc--CGGCuGGCGGCG---CUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 73687 0.66 0.699776
Target:  5'- cUCGUCggaGGCCGuggagcgaguGCCGCCGCaGCcggcagagcgccgaaCCCCg -3'
miRNA:   3'- cAGCAG---CCGGC----------UGGCGGCGcUG---------------GGGG- -5'
29806 3' -64.1 NC_006273.1 + 75261 0.71 0.420151
Target:  5'- -gCGcUGGCCG-CCGCgGCGGCCgCCu -3'
miRNA:   3'- caGCaGCCGGCuGGCGgCGCUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 75493 0.68 0.576053
Target:  5'- -cCGcCGGCgcuuCGGCCGCCuGCGACCUa- -3'
miRNA:   3'- caGCaGCCG----GCUGGCGG-CGCUGGGgg -5'
29806 3' -64.1 NC_006273.1 + 76618 0.67 0.668571
Target:  5'- -gCGUCcguGGCCG-CgGCCgGCGGCCUCUu -3'
miRNA:   3'- caGCAG---CCGGCuGgCGG-CGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 76630 0.66 0.705234
Target:  5'- cGUCGaCGGCgcACUGgCGCGACCcgaCCCg -3'
miRNA:   3'- -CAGCaGCCGgcUGGCgGCGCUGG---GGG- -5'
29806 3' -64.1 NC_006273.1 + 77157 0.71 0.436273
Target:  5'- cGUCGcCGGCCGACgCGCgccCGCG-CCUCa -3'
miRNA:   3'- -CAGCaGCCGGCUG-GCG---GCGCuGGGGg -5'
29806 3' -64.1 NC_006273.1 + 79477 0.66 0.696128
Target:  5'- uUCGcgcaCGGCaCG-CCGCUGCGAaaCCCa -3'
miRNA:   3'- cAGCa---GCCG-GCuGGCGGCGCUggGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.