miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 3' -64.1 NC_006273.1 + 234108 0.67 0.640795
Target:  5'- -cCGUCuguguuccCCGuguCCGCCGCGaaagGCCCCCg -3'
miRNA:   3'- caGCAGcc------GGCu--GGCGGCGC----UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 233666 0.69 0.548694
Target:  5'- -cUGUCGGCCcagucgccACCGCCGCGGCggauUUCCg -3'
miRNA:   3'- caGCAGCCGGc-------UGGCGGCGCUG----GGGG- -5'
29806 3' -64.1 NC_006273.1 + 233646 0.75 0.235818
Target:  5'- cGUCGUgcCGGCCcACCGCCgGCGcaGCUCCCg -3'
miRNA:   3'- -CAGCA--GCCGGcUGGCGG-CGC--UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 233428 0.71 0.396658
Target:  5'- cGUCGcCGGCC--CCGCCGCGcaACCCagCCa -3'
miRNA:   3'- -CAGCaGCCGGcuGGCGGCGC--UGGG--GG- -5'
29806 3' -64.1 NC_006273.1 + 233427 0.66 0.701598
Target:  5'- gGUCGUUcuaacuguacaCGGCgGCCGUGGCCUCCg -3'
miRNA:   3'- -CAGCAGccg--------GCUGgCGGCGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 233357 0.7 0.486671
Target:  5'- aUCGcgcaCGGCgCGuccCCGCCgGCGGCCUCCg -3'
miRNA:   3'- cAGCa---GCCG-GCu--GGCGG-CGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 233205 0.7 0.495341
Target:  5'- -cCGUCGGC--GCCGCCGCuGCUgCCg -3'
miRNA:   3'- caGCAGCCGgcUGGCGGCGcUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 231719 0.7 0.477218
Target:  5'- -gCGUCGGCauGCCGCUgaucgcaGUGGCCCCa -3'
miRNA:   3'- caGCAGCCGgcUGGCGG-------CGCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 227692 0.69 0.50408
Target:  5'- -cCG-CGGCC-ACUGCCGCcGCCgCCCa -3'
miRNA:   3'- caGCaGCCGGcUGGCGGCGcUGG-GGG- -5'
29806 3' -64.1 NC_006273.1 + 227023 0.7 0.495341
Target:  5'- -aCGaUGGCCGcacagacccuaGCCGuuGCGAUCCCUa -3'
miRNA:   3'- caGCaGCCGGC-----------UGGCggCGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 219725 0.67 0.640795
Target:  5'- cGUCGUCaccaGGCaGugCaGCCGCGGgCCCg -3'
miRNA:   3'- -CAGCAG----CCGgCugG-CGGCGCUgGGGg -5'
29806 3' -64.1 NC_006273.1 + 217972 0.67 0.650067
Target:  5'- cGUCGUCaucgcucucguGGCCGGCgGCCauacgcGCGGCaaccgcgucuuCCCCu -3'
miRNA:   3'- -CAGCAG-----------CCGGCUGgCGG------CGCUG-----------GGGG- -5'
29806 3' -64.1 NC_006273.1 + 216858 0.67 0.668571
Target:  5'- uGUgGUCaaaaGGCCGGCagGCgCGCaGGCCCUCg -3'
miRNA:   3'- -CAgCAG----CCGGCUGg-CG-GCG-CUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 213894 0.67 0.631517
Target:  5'- cGUCGUUGuguaacacCUGACCGCUGCGugCgUCCa -3'
miRNA:   3'- -CAGCAGCc-------GGCUGGCGGCGCugG-GGG- -5'
29806 3' -64.1 NC_006273.1 + 205624 0.66 0.71429
Target:  5'- -gCGUCgGGCUGcgcGCCGUCGaGACCCUg -3'
miRNA:   3'- caGCAG-CCGGC---UGGCGGCgCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 205499 0.68 0.616675
Target:  5'- uGUUGUC-GCCggaucagcagaagaaGACCGCUGUGugCCUCa -3'
miRNA:   3'- -CAGCAGcCGG---------------CUGGCGGCGCugGGGG- -5'
29806 3' -64.1 NC_006273.1 + 204717 0.67 0.622239
Target:  5'- -cCG-CGGCCGGCCGCagGaaGCCgCCCg -3'
miRNA:   3'- caGCaGCCGGCUGGCGg-CgcUGG-GGG- -5'
29806 3' -64.1 NC_006273.1 + 204620 0.67 0.650067
Target:  5'- aUCGUC-GCC-ACCGCCGCcGGCgCCg -3'
miRNA:   3'- cAGCAGcCGGcUGGCGGCG-CUGgGGg -5'
29806 3' -64.1 NC_006273.1 + 202151 0.71 0.428167
Target:  5'- cGUCGUC-GCCG-CC-CCGgGGCCCUCg -3'
miRNA:   3'- -CAGCAGcCGGCuGGcGGCgCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 201139 0.71 0.436273
Target:  5'- cUCaUCGGCCGcuGCCuGCCgGCGGCCCUg -3'
miRNA:   3'- cAGcAGCCGGC--UGG-CGG-CGCUGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.