miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 3' -64.1 NC_006273.1 + 199482 0.67 0.640795
Target:  5'- gGUCGUUGGCUc-CCGCUGUgcuGGCCgCCg -3'
miRNA:   3'- -CAGCAGCCGGcuGGCGGCG---CUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 198730 0.75 0.246378
Target:  5'- aGUCGUCGGCUacCCGCCGCcaGGCCaguuCCCg -3'
miRNA:   3'- -CAGCAGCCGGcuGGCGGCG--CUGG----GGG- -5'
29806 3' -64.1 NC_006273.1 + 198144 0.71 0.428167
Target:  5'- cGUCGUC-GCCG-CCGUCGCGcCUUCCu -3'
miRNA:   3'- -CAGCAGcCGGCuGGCGGCGCuGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 196508 0.67 0.653773
Target:  5'- gGUgGUgCGGCUGuACCGCUGCaaccggcugggcgugGGCaCCCCg -3'
miRNA:   3'- -CAgCA-GCCGGC-UGGCGGCG---------------CUG-GGGG- -5'
29806 3' -64.1 NC_006273.1 + 195759 0.67 0.625949
Target:  5'- cGUCGgagguguccggCGGCCauggcccagcgcaacGGCauguCGCCGCGcCCCCCg -3'
miRNA:   3'- -CAGCa----------GCCGG---------------CUG----GCGGCGCuGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 195570 0.66 0.71429
Target:  5'- cGUCGUCGGCUG-CCGggugguuuuCCaCGGCCUUCc -3'
miRNA:   3'- -CAGCAGCCGGCuGGC---------GGcGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 195547 0.68 0.585245
Target:  5'- uUUGagCGGCUcGCCGCCGCGccacacgcugaGCCCCg -3'
miRNA:   3'- cAGCa-GCCGGcUGGCGGCGC-----------UGGGGg -5'
29806 3' -64.1 NC_006273.1 + 194839 0.69 0.50408
Target:  5'- gGUgGUaGGUCGACCGCCcuCGGUCCCCg -3'
miRNA:   3'- -CAgCAgCCGGCUGGCGGc-GCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 194170 0.67 0.640795
Target:  5'- -cCGUCuguguuccCCGuguCCGCCGCGaaagGCCCCCg -3'
miRNA:   3'- caGCAGcc------GGCu--GGCGGCGC----UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 192664 0.69 0.530679
Target:  5'- cUCGUC-GCCGugUGgCGCGGCCUggCCg -3'
miRNA:   3'- cAGCAGcCGGCugGCgGCGCUGGG--GG- -5'
29806 3' -64.1 NC_006273.1 + 192356 0.67 0.667648
Target:  5'- cGUUGcgCGGCCGugGCgCGUCGCGGCUacacuuaCCCg -3'
miRNA:   3'- -CAGCa-GCCGGC--UG-GCGGCGCUGG-------GGG- -5'
29806 3' -64.1 NC_006273.1 + 191483 0.7 0.469552
Target:  5'- --aGUCGGCgCcGCCGCCGCuugGACCUUCg -3'
miRNA:   3'- cagCAGCCG-GcUGGCGGCG---CUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 190039 0.66 0.705234
Target:  5'- gGUCcaguUCGGCCGGCgCGCgcuugagcugUGCGAUgCCCu -3'
miRNA:   3'- -CAGc---AGCCGGCUG-GCG----------GCGCUGgGGG- -5'
29806 3' -64.1 NC_006273.1 + 189956 0.68 0.612967
Target:  5'- cUCGUCGGCCGG-CGUgGgCGGCUCgCg -3'
miRNA:   3'- cAGCAGCCGGCUgGCGgC-GCUGGGgG- -5'
29806 3' -64.1 NC_006273.1 + 189877 0.69 0.512885
Target:  5'- -gCGUCgGGCgGACCGCCGgGcAUCgCCg -3'
miRNA:   3'- caGCAG-CCGgCUGGCGGCgC-UGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 189498 0.68 0.585245
Target:  5'- cUCGggCGGcCCGGCCGCCGCG-CUgugugagaguUCCa -3'
miRNA:   3'- cAGCa-GCC-GGCUGGCGGCGCuGG----------GGG- -5'
29806 3' -64.1 NC_006273.1 + 186736 0.66 0.705234
Target:  5'- -cCGUCcugCGACCGCUGCGugCgCCg -3'
miRNA:   3'- caGCAGccgGCUGGCGGCGCugGgGG- -5'
29806 3' -64.1 NC_006273.1 + 184715 0.66 0.67779
Target:  5'- uUCGUCgGGCCGGCUGa-GCGuCUCCa -3'
miRNA:   3'- cAGCAG-CCGGCUGGCggCGCuGGGGg -5'
29806 3' -64.1 NC_006273.1 + 183789 0.69 0.512885
Target:  5'- -gUGUCGGaagaagaccCCGcuGCCGCCGCcACCCCUc -3'
miRNA:   3'- caGCAGCC---------GGC--UGGCGGCGcUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 182843 0.66 0.71429
Target:  5'- -gCGaCGaGCuCGGCUGCUGCagcacaacGGCCCCCa -3'
miRNA:   3'- caGCaGC-CG-GCUGGCGGCG--------CUGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.