miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 3' -64.1 NC_006273.1 + 132362 0.7 0.486671
Target:  5'- -cCG-CGGCCGcuGCCGCCGCGGCgUUUCg -3'
miRNA:   3'- caGCaGCCGGC--UGGCGGCGCUG-GGGG- -5'
29806 3' -64.1 NC_006273.1 + 77157 0.71 0.436273
Target:  5'- cGUCGcCGGCCGACgCGCgccCGCG-CCUCa -3'
miRNA:   3'- -CAGCaGCCGGCUG-GCG---GCGCuGGGGg -5'
29806 3' -64.1 NC_006273.1 + 116887 0.7 0.444467
Target:  5'- -aCGUUGGCCGugUacgGgCGCGAUCCCg -3'
miRNA:   3'- caGCAGCCGGCugG---CgGCGCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 153779 0.7 0.444467
Target:  5'- -cCGcuUCGGCCu-CCGCCGCGGCCgCg -3'
miRNA:   3'- caGC--AGCCGGcuGGCGGCGCUGGgGg -5'
29806 3' -64.1 NC_006273.1 + 61570 0.7 0.461109
Target:  5'- cUCGUCGGCCGggucgcGCgGCCGUuuGGCCaCCg -3'
miRNA:   3'- cAGCAGCCGGC------UGgCGGCG--CUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 119879 0.7 0.461109
Target:  5'- uUCG-CGGCCGauuuucuucGCCGCCGCG-CCgCUg -3'
miRNA:   3'- cAGCaGCCGGC---------UGGCGGCGCuGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 191483 0.7 0.469552
Target:  5'- --aGUCGGCgCcGCCGCCGCuugGACCUUCg -3'
miRNA:   3'- cagCAGCCG-GcUGGCGGCG---CUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 95304 0.7 0.469552
Target:  5'- gGUCGaCGGUgGGCCGCCaUGACaCCUCa -3'
miRNA:   3'- -CAGCaGCCGgCUGGCGGcGCUG-GGGG- -5'
29806 3' -64.1 NC_006273.1 + 114208 0.7 0.486671
Target:  5'- -aUGUCGGCCGAUCGC-GCcGCCUCg -3'
miRNA:   3'- caGCAGCCGGCUGGCGgCGcUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 75261 0.71 0.420151
Target:  5'- -gCGcUGGCCG-CCGCgGCGGCCgCCu -3'
miRNA:   3'- caGCaGCCGGCuGGCGgCGCUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 233428 0.71 0.396658
Target:  5'- cGUCGcCGGCC--CCGCCGCGcaACCCagCCa -3'
miRNA:   3'- -CAGCaGCCGGcuGGCGGCGC--UGGG--GG- -5'
29806 3' -64.1 NC_006273.1 + 64832 0.71 0.396658
Target:  5'- aGUCGcgguUCGGCCgGACCGUgcacgcgcucuCGCGGCCUUCa -3'
miRNA:   3'- -CAGC----AGCCGG-CUGGCG-----------GCGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 198730 0.75 0.246378
Target:  5'- aGUCGUCGGCUacCCGCCGCcaGGCCaguuCCCg -3'
miRNA:   3'- -CAGCAGCCGGcuGGCGGCG--CUGG----GGG- -5'
29806 3' -64.1 NC_006273.1 + 163590 0.75 0.251804
Target:  5'- cGUUGUC-GCC-ACCGCCGCGGCUgCCa -3'
miRNA:   3'- -CAGCAGcCGGcUGGCGGCGCUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 163844 0.75 0.251804
Target:  5'- aGUCGcCGGCagCGGCCGCCGgCGaggGCCCUCg -3'
miRNA:   3'- -CAGCaGCCG--GCUGGCGGC-GC---UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 63178 0.75 0.257327
Target:  5'- cUCG-CGGCgCGGCCGgCGCGGCCUCg -3'
miRNA:   3'- cAGCaGCCG-GCUGGCgGCGCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 124415 0.74 0.280416
Target:  5'- cGUCGUCGGgCGACacguGCUGCGGCCgCg -3'
miRNA:   3'- -CAGCAGCCgGCUGg---CGGCGCUGGgGg -5'
29806 3' -64.1 NC_006273.1 + 94463 0.73 0.30512
Target:  5'- -cCGaCGGcCCGGCCggGCUGgGACCCCCg -3'
miRNA:   3'- caGCaGCC-GGCUGG--CGGCgCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 153358 0.73 0.318085
Target:  5'- uUCGUCcgaGGCCGGCgGCacgCGCGugCCCUg -3'
miRNA:   3'- cAGCAG---CCGGCUGgCG---GCGCugGGGG- -5'
29806 3' -64.1 NC_006273.1 + 23555 0.72 0.352288
Target:  5'- uUCGUCGGCCGACC-CCGUcACUgUCg -3'
miRNA:   3'- cAGCAGCCGGCUGGcGGCGcUGGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.