Results 21 - 40 of 180 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29806 | 3' | -64.1 | NC_006273.1 | + | 132362 | 0.7 | 0.486671 |
Target: 5'- -cCG-CGGCCGcuGCCGCCGCGGCgUUUCg -3' miRNA: 3'- caGCaGCCGGC--UGGCGGCGCUG-GGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 114208 | 0.7 | 0.486671 |
Target: 5'- -aUGUCGGCCGAUCGC-GCcGCCUCg -3' miRNA: 3'- caGCAGCCGGCUGGCGgCGcUGGGGg -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 23555 | 0.72 | 0.352288 |
Target: 5'- uUCGUCGGCCGACC-CCGUcACUgUCg -3' miRNA: 3'- cAGCAGCCGGCUGGcGGCGcUGGgGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 153358 | 0.73 | 0.318085 |
Target: 5'- uUCGUCcgaGGCCGGCgGCacgCGCGugCCCUg -3' miRNA: 3'- cAGCAG---CCGGCUGgCG---GCGCugGGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 94463 | 0.73 | 0.30512 |
Target: 5'- -cCGaCGGcCCGGCCggGCUGgGACCCCCg -3' miRNA: 3'- caGCaGCC-GGCUGG--CGGCgCUGGGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 124415 | 0.74 | 0.280416 |
Target: 5'- cGUCGUCGGgCGACacguGCUGCGGCCgCg -3' miRNA: 3'- -CAGCAGCCgGCUGg---CGGCGCUGGgGg -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 63178 | 0.75 | 0.257327 |
Target: 5'- cUCG-CGGCgCGGCCGgCGCGGCCUCg -3' miRNA: 3'- cAGCaGCCG-GCUGGCgGCGCUGGGGg -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 163844 | 0.75 | 0.251804 |
Target: 5'- aGUCGcCGGCagCGGCCGCCGgCGaggGCCCUCg -3' miRNA: 3'- -CAGCaGCCG--GCUGGCGGC-GC---UGGGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 163590 | 0.75 | 0.251804 |
Target: 5'- cGUUGUC-GCC-ACCGCCGCGGCUgCCa -3' miRNA: 3'- -CAGCAGcCGGcUGGCGGCGCUGGgGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 198730 | 0.75 | 0.246378 |
Target: 5'- aGUCGUCGGCUacCCGCCGCcaGGCCaguuCCCg -3' miRNA: 3'- -CAGCAGCCGGcuGGCGGCG--CUGG----GGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 64832 | 0.71 | 0.396658 |
Target: 5'- aGUCGcgguUCGGCCgGACCGUgcacgcgcucuCGCGGCCUUCa -3' miRNA: 3'- -CAGC----AGCCGG-CUGGCG-----------GCGCUGGGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 233428 | 0.71 | 0.396658 |
Target: 5'- cGUCGcCGGCC--CCGCCGCGcaACCCagCCa -3' miRNA: 3'- -CAGCaGCCGGcuGGCGGCGC--UGGG--GG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 95304 | 0.7 | 0.469552 |
Target: 5'- gGUCGaCGGUgGGCCGCCaUGACaCCUCa -3' miRNA: 3'- -CAGCaGCCGgCUGGCGGcGCUG-GGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 191483 | 0.7 | 0.469552 |
Target: 5'- --aGUCGGCgCcGCCGCCGCuugGACCUUCg -3' miRNA: 3'- cagCAGCCG-GcUGGCGGCG---CUGGGGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 119879 | 0.7 | 0.461109 |
Target: 5'- uUCG-CGGCCGauuuucuucGCCGCCGCG-CCgCUg -3' miRNA: 3'- cAGCaGCCGGC---------UGGCGGCGCuGGgGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 61570 | 0.7 | 0.461109 |
Target: 5'- cUCGUCGGCCGggucgcGCgGCCGUuuGGCCaCCg -3' miRNA: 3'- cAGCAGCCGGC------UGgCGGCG--CUGGgGG- -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 153779 | 0.7 | 0.444467 |
Target: 5'- -cCGcuUCGGCCu-CCGCCGCGGCCgCg -3' miRNA: 3'- caGC--AGCCGGcuGGCGGCGCUGGgGg -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 116887 | 0.7 | 0.444467 |
Target: 5'- -aCGUUGGCCGugUacgGgCGCGAUCCCg -3' miRNA: 3'- caGCAGCCGGCugG---CgGCGCUGGGGg -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 77157 | 0.71 | 0.436273 |
Target: 5'- cGUCGcCGGCCGACgCGCgccCGCG-CCUCa -3' miRNA: 3'- -CAGCaGCCGGCUG-GCG---GCGCuGGGGg -5' |
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29806 | 3' | -64.1 | NC_006273.1 | + | 75261 | 0.71 | 0.420151 |
Target: 5'- -gCGcUGGCCG-CCGCgGCGGCCgCCu -3' miRNA: 3'- caGCaGCCGGCuGGCGgCGCUGGgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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