miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 3' -64.1 NC_006273.1 + 140578 1.11 0.000855
Target:  5'- cGUCGUCGGCCGACCGCCGCGACCCCCa -3'
miRNA:   3'- -CAGCAGCCGGCUGGCGGCGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 201139 0.71 0.436273
Target:  5'- cUCaUCGGCCGcuGCCuGCCgGCGGCCCUg -3'
miRNA:   3'- cAGcAGCCGGC--UGG-CGG-CGCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 46327 0.7 0.461109
Target:  5'- --aG-CGGCCGccuacGCCGCCGguccgGGCCCCCa -3'
miRNA:   3'- cagCaGCCGGC-----UGGCGGCg----CUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 95227 0.66 0.722391
Target:  5'- cGUCGUCuacgacggcguuuGGCCcgagacccACCGCCGUucuuuuCCCCCg -3'
miRNA:   3'- -CAGCAG-------------CCGGc-------UGGCGGCGcu----GGGGG- -5'
29806 3' -64.1 NC_006273.1 + 92966 0.74 0.286439
Target:  5'- --aGUCGGCCuccACCGCCGUGGCggauuccuCCCCg -3'
miRNA:   3'- cagCAGCCGGc--UGGCGGCGCUG--------GGGG- -5'
29806 3' -64.1 NC_006273.1 + 179250 0.73 0.311551
Target:  5'- -gCGUCGGUCG-CCGCCuccGCGGCCCg- -3'
miRNA:   3'- caGCAGCCGGCuGGCGG---CGCUGGGgg -5'
29806 3' -64.1 NC_006273.1 + 46466 0.73 0.324721
Target:  5'- --gGUCGGCUGgacACCGCCgGUGACgCCCa -3'
miRNA:   3'- cagCAGCCGGC---UGGCGG-CGCUGgGGG- -5'
29806 3' -64.1 NC_006273.1 + 171125 0.73 0.345244
Target:  5'- -cCGcuUCGGCCG-CCGCCGCaACgCCCg -3'
miRNA:   3'- caGC--AGCCGGCuGGCGGCGcUGgGGG- -5'
29806 3' -64.1 NC_006273.1 + 83386 0.71 0.412227
Target:  5'- -aCGUCGGgCuGCUGCCGCcGCCaCCCg -3'
miRNA:   3'- caGCAGCCgGcUGGCGGCGcUGG-GGG- -5'
29806 3' -64.1 NC_006273.1 + 164437 0.71 0.436273
Target:  5'- cGUCGUCGuCUG-CgGCCGCGGCCgCUCg -3'
miRNA:   3'- -CAGCAGCcGGCuGgCGGCGCUGG-GGG- -5'
29806 3' -64.1 NC_006273.1 + 17181 0.71 0.420151
Target:  5'- -aUGcCGGUCGuCCGCCGuCGGCCgCCg -3'
miRNA:   3'- caGCaGCCGGCuGGCGGC-GCUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 38535 0.71 0.396658
Target:  5'- cGUCGcCGGCC--CCGCCGCGcaACCCagCCa -3'
miRNA:   3'- -CAGCaGCCGGcuGGCGGCGC--UGGG--GG- -5'
29806 3' -64.1 NC_006273.1 + 70846 0.78 0.160682
Target:  5'- -----gGGCCGACCGCCGCGcCCUCCc -3'
miRNA:   3'- cagcagCCGGCUGGCGGCGCuGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 202151 0.71 0.428167
Target:  5'- cGUCGUC-GCCG-CC-CCGgGGCCCUCg -3'
miRNA:   3'- -CAGCAGcCGGCuGGcGGCgCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 60040 0.77 0.188598
Target:  5'- -cCGcCuGGCUGACCGCCcaaCGACCCCCg -3'
miRNA:   3'- caGCaG-CCGGCUGGCGGc--GCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 67724 0.72 0.352288
Target:  5'- -aCGgCGGCCGAccCCGCCguuGCGGCCgCCg -3'
miRNA:   3'- caGCaGCCGGCU--GGCGG---CGCUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 198144 0.71 0.428167
Target:  5'- cGUCGUC-GCCG-CCGUCGCGcCUUCCu -3'
miRNA:   3'- -CAGCAGcCGGCuGGCGGCGCuGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 87878 0.7 0.452746
Target:  5'- -cCGagCGaGCgGGCCGCCGCuaucgccauGGCCCCCu -3'
miRNA:   3'- caGCa-GC-CGgCUGGCGGCG---------CUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 38754 0.75 0.235818
Target:  5'- cGUCGUgcCGGCCcACCGCCgGCGcaGCUCCCg -3'
miRNA:   3'- -CAGCA--GCCGGcUGGCGG-CGC--UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 68053 0.73 0.311551
Target:  5'- ---cUCGGCCagcGCCGCCGUGGCCgCCg -3'
miRNA:   3'- cagcAGCCGGc--UGGCGGCGCUGGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.