miRNA display CGI


Results 21 - 40 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 3' -64.1 NC_006273.1 + 161652 0.7 0.486671
Target:  5'- ---cUCGGCCG-CCGCCGCcACCCa- -3'
miRNA:   3'- cagcAGCCGGCuGGCGGCGcUGGGgg -5'
29806 3' -64.1 NC_006273.1 + 46327 0.7 0.461109
Target:  5'- --aG-CGGCCGccuacGCCGCCGguccgGGCCCCCa -3'
miRNA:   3'- cagCaGCCGGC-----UGGCGGCg----CUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 38535 0.71 0.396658
Target:  5'- cGUCGcCGGCC--CCGCCGCGcaACCCagCCa -3'
miRNA:   3'- -CAGCaGCCGGcuGGCGGCGC--UGGG--GG- -5'
29806 3' -64.1 NC_006273.1 + 38754 0.75 0.235818
Target:  5'- cGUCGUgcCGGCCcACCGCCgGCGcaGCUCCCg -3'
miRNA:   3'- -CAGCA--GCCGGcUGGCGG-CGC--UGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 56507 0.69 0.543268
Target:  5'- -aCGUCGccacgucucgagaauGCCGGCC-CCGCGGggUCCCCu -3'
miRNA:   3'- caGCAGC---------------CGGCUGGcGGCGCU--GGGGG- -5'
29806 3' -64.1 NC_006273.1 + 194839 0.69 0.50408
Target:  5'- gGUgGUaGGUCGACCGCCcuCGGUCCCCg -3'
miRNA:   3'- -CAgCAgCCGGCUGGCGGc-GCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 201139 0.71 0.436273
Target:  5'- cUCaUCGGCCGcuGCCuGCCgGCGGCCCUg -3'
miRNA:   3'- cAGcAGCCGGC--UGG-CGG-CGCUGGGGg -5'
29806 3' -64.1 NC_006273.1 + 60040 0.77 0.188598
Target:  5'- -cCGcCuGGCUGACCGCCcaaCGACCCCCg -3'
miRNA:   3'- caGCaG-CCGGCUGGCGGc--GCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 38312 0.7 0.495341
Target:  5'- -cCGUCGGC--GCCGCCGCuGCUgCCg -3'
miRNA:   3'- caGCAGCCGgcUGGCGGCGcUGGgGG- -5'
29806 3' -64.1 NC_006273.1 + 70846 0.78 0.160682
Target:  5'- -----gGGCCGACCGCCGCGcCCUCCc -3'
miRNA:   3'- cagcagCCGGCUGGCGGCGCuGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 87878 0.7 0.452746
Target:  5'- -cCGagCGaGCgGGCCGCCGCuaucgccauGGCCCCCu -3'
miRNA:   3'- caGCa-GC-CGgCUGGCGGCG---------CUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 38464 0.7 0.486671
Target:  5'- aUCGcgcaCGGCgCGuccCCGCCgGCGGCCUCCg -3'
miRNA:   3'- cAGCa---GCCG-GCu--GGCGG-CGCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 202151 0.71 0.428167
Target:  5'- cGUCGUC-GCCG-CC-CCGgGGCCCUCg -3'
miRNA:   3'- -CAGCAGcCGGCuGGcGGCgCUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 83386 0.71 0.412227
Target:  5'- -aCGUCGGgCuGCUGCCGCcGCCaCCCg -3'
miRNA:   3'- caGCAGCCgGcUGGCGGCGcUGG-GGG- -5'
29806 3' -64.1 NC_006273.1 + 46466 0.73 0.324721
Target:  5'- --gGUCGGCUGgacACCGCCgGUGACgCCCa -3'
miRNA:   3'- cagCAGCCGGC---UGGCGG-CGCUGgGGG- -5'
29806 3' -64.1 NC_006273.1 + 92966 0.74 0.286439
Target:  5'- --aGUCGGCCuccACCGCCGUGGCggauuccuCCCCg -3'
miRNA:   3'- cagCAGCCGGc--UGGCGGCGCUG--------GGGG- -5'
29806 3' -64.1 NC_006273.1 + 117497 0.68 0.557773
Target:  5'- -gCGUUuGuuGuguCCGCCGCuGCCCCCg -3'
miRNA:   3'- caGCAGcCggCu--GGCGGCGcUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 46362 0.69 0.548694
Target:  5'- -aCG-CGGCUG-UCGUCGCacaGGCCCCCg -3'
miRNA:   3'- caGCaGCCGGCuGGCGGCG---CUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 183789 0.69 0.512885
Target:  5'- -gUGUCGGaagaagaccCCGcuGCCGCCGCcACCCCUc -3'
miRNA:   3'- caGCAGCC---------GGC--UGGCGGCGcUGGGGG- -5'
29806 3' -64.1 NC_006273.1 + 117044 0.69 0.50408
Target:  5'- cGUCGagGGcCCGGCCGuuGCcGCCUCa -3'
miRNA:   3'- -CAGCagCC-GGCUGGCggCGcUGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.