miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 5' -53.2 NC_006273.1 + 213681 0.66 0.987527
Target:  5'- -cGAAAGCCaggucgcaGGAGcGGUCCGAGuGGCg -3'
miRNA:   3'- uuUUUUCGGg-------CCUCcCCGGGUUU-UCG- -5'
29806 5' -53.2 NC_006273.1 + 215743 0.66 0.987527
Target:  5'- cAAGAAGCgaCCGcAGuGGGCCCAc-AGCa -3'
miRNA:   3'- uUUUUUCG--GGCcUC-CCCGGGUuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 121282 0.66 0.987527
Target:  5'- ---cAGGCCCGGGaugcucuuGGGacacagcaGCCCAAAAuGCu -3'
miRNA:   3'- uuuuUUCGGGCCU--------CCC--------CGGGUUUU-CG- -5'
29806 5' -53.2 NC_006273.1 + 151465 0.66 0.987527
Target:  5'- ---uAGGCCuCGGGuacGGGGUCCAGcguGCc -3'
miRNA:   3'- uuuuUUCGG-GCCU---CCCCGGGUUuu-CG- -5'
29806 5' -53.2 NC_006273.1 + 36757 0.66 0.985921
Target:  5'- ---cGGGCuCCGGcGGGuGGCCU--GAGCa -3'
miRNA:   3'- uuuuUUCG-GGCC-UCC-CCGGGuuUUCG- -5'
29806 5' -53.2 NC_006273.1 + 136865 0.66 0.985921
Target:  5'- ------uCCCGGAGGGGggaAGAGGCa -3'
miRNA:   3'- uuuuuucGGGCCUCCCCgggUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 929 0.66 0.985921
Target:  5'- ----cGGUCgCGGccgcGGGGCCgGAGGGCc -3'
miRNA:   3'- uuuuuUCGG-GCCu---CCCCGGgUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 140791 0.66 0.985921
Target:  5'- cGGGAAGCCggCGGAGGucgCCGGGAGCa -3'
miRNA:   3'- uUUUUUCGG--GCCUCCccgGGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 195821 0.66 0.985921
Target:  5'- ----cGGUCgCGGccgcGGGGCCgGAGGGCc -3'
miRNA:   3'- uuuuuUCGG-GCCu---CCCCGGgUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 101845 0.66 0.98416
Target:  5'- ----cGGCuCCaGAGGcuGGCCCAGAGcGCg -3'
miRNA:   3'- uuuuuUCG-GGcCUCC--CCGGGUUUU-CG- -5'
29806 5' -53.2 NC_006273.1 + 7734 0.66 0.98416
Target:  5'- gGAGAGAGaagaGGAgcGGGGCguCCGAAGGCg -3'
miRNA:   3'- -UUUUUUCggg-CCU--CCCCG--GGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 211712 0.66 0.98416
Target:  5'- ---cGGGCCUcuGGGGGCCgCAcGGAGCg -3'
miRNA:   3'- uuuuUUCGGGccUCCCCGG-GU-UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 95020 0.66 0.983027
Target:  5'- -cGAGGGUCCGGccgccagucgugaccGGGGGUCCcucGGCc -3'
miRNA:   3'- uuUUUUCGGGCC---------------UCCCCGGGuuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 140657 0.66 0.982238
Target:  5'- aAGGGGAGCUgGGuGGGGgaucCCCGGucGCc -3'
miRNA:   3'- -UUUUUUCGGgCCuCCCC----GGGUUuuCG- -5'
29806 5' -53.2 NC_006273.1 + 46629 0.66 0.982238
Target:  5'- --uGAAGCCCGu---GGCCCAGGAGa -3'
miRNA:   3'- uuuUUUCGGGCcuccCCGGGUUUUCg -5'
29806 5' -53.2 NC_006273.1 + 19403 0.66 0.980145
Target:  5'- gAAAGAGGCCUGGuuacAGcGcGGCCgGcGAGCa -3'
miRNA:   3'- -UUUUUUCGGGCC----UC-C-CCGGgUuUUCG- -5'
29806 5' -53.2 NC_006273.1 + 149427 0.66 0.979706
Target:  5'- -----uGCCCGauggcacGGGGGGCgacggccCCGAGGGCg -3'
miRNA:   3'- uuuuuuCGGGC-------CUCCCCG-------GGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 113724 0.67 0.977874
Target:  5'- cGAGGAcAGCgCCGGAGGuGGCgaCGGcGGCg -3'
miRNA:   3'- -UUUUU-UCG-GGCCUCC-CCGg-GUUuUCG- -5'
29806 5' -53.2 NC_006273.1 + 125775 0.67 0.977874
Target:  5'- --cGAGGCCCaGGGGuuguguguGGCCgCGAAAGUc -3'
miRNA:   3'- uuuUUUCGGGcCUCC--------CCGG-GUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 134833 0.67 0.977874
Target:  5'- --cAGAGUCgGGGuGGGGCCgGAcagguGAGCc -3'
miRNA:   3'- uuuUUUCGGgCCU-CCCCGGgUU-----UUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.