Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29806 | 5' | -53.2 | NC_006273.1 | + | 39885 | 0.67 | 0.975417 |
Target: 5'- --cAGGGCCgCGGAcuGGGUCCccGAGCg -3' miRNA: 3'- uuuUUUCGG-GCCUc-CCCGGGuuUUCG- -5' |
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29806 | 5' | -53.2 | NC_006273.1 | + | 113724 | 0.67 | 0.977874 |
Target: 5'- cGAGGAcAGCgCCGGAGGuGGCgaCGGcGGCg -3' miRNA: 3'- -UUUUU-UCG-GGCCUCC-CCGg-GUUuUCG- -5' |
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29806 | 5' | -53.2 | NC_006273.1 | + | 65672 | 0.67 | 0.977637 |
Target: 5'- -----cGCCUGGAcguugcacgcggcGGGuaCCGAAAGCg -3' miRNA: 3'- uuuuuuCGGGCCU-------------CCCcgGGUUUUCG- -5' |
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29806 | 5' | -53.2 | NC_006273.1 | + | 122415 | 0.67 | 0.975417 |
Target: 5'- --cGGAGUCCGGcGGaucgcGGCCCucccAAAGCg -3' miRNA: 3'- uuuUUUCGGGCCuCC-----CCGGGu---UUUCG- -5' |
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29806 | 5' | -53.2 | NC_006273.1 | + | 73357 | 0.67 | 0.969915 |
Target: 5'- cAGAAGAGCCagcaccAGcGGGCCCAGAGucGCa -3' miRNA: 3'- -UUUUUUCGGgcc---UC-CCCGGGUUUU--CG- -5' |
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29806 | 5' | -53.2 | NC_006273.1 | + | 234777 | 0.67 | 0.975417 |
Target: 5'- --cAGGGCCgCGGAcuGGGUCCccGAGCg -3' miRNA: 3'- uuuUUUCGG-GCCUc-CCCGGGuuUUCG- -5' |
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29806 | 5' | -53.2 | NC_006273.1 | + | 95505 | 0.67 | 0.975417 |
Target: 5'- gGGGAGGGuCCCGGcacGGGCCgAGGAGa -3' miRNA: 3'- -UUUUUUC-GGGCCuc-CCCGGgUUUUCg -5' |
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29806 | 5' | -53.2 | NC_006273.1 | + | 78676 | 0.68 | 0.955996 |
Target: 5'- gAGAAGGGgCCGGGGuccgcGGGCaccgccgCCGGAGGCg -3' miRNA: 3'- -UUUUUUCgGGCCUC-----CCCG-------GGUUUUCG- -5' |
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29806 | 5' | -53.2 | NC_006273.1 | + | 83411 | 0.68 | 0.952436 |
Target: 5'- ----cGGCCCGGcGGcGCCCG--AGCg -3' miRNA: 3'- uuuuuUCGGGCCuCCcCGGGUuuUCG- -5' |
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29806 | 5' | -53.2 | NC_006273.1 | + | 140836 | 0.68 | 0.943848 |
Target: 5'- --cGGAGCCCGGGgaggagcgggguGGGGgUgGGAAGCc -3' miRNA: 3'- uuuUUUCGGGCCU------------CCCCgGgUUUUCG- -5' |
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29806 | 5' | -53.2 | NC_006273.1 | + | 181836 | 0.68 | 0.963585 |
Target: 5'- -uAGGAGCCUGGGGGuucuGCCCAAc--- -3' miRNA: 3'- uuUUUUCGGGCCUCCc---CGGGUUuucg -5' |
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29806 | 5' | -53.2 | NC_006273.1 | + | 174960 | 0.68 | 0.963585 |
Target: 5'- ---cGAGCUCgaGGAGGGGCCgcugccCGGGGGUg -3' miRNA: 3'- uuuuUUCGGG--CCUCCCCGG------GUUUUCG- -5' |
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29806 | 5' | -53.2 | NC_006273.1 | + | 186643 | 0.68 | 0.952436 |
Target: 5'- ---cGAGCUCGGAcGGGCUCGuu-GCa -3' miRNA: 3'- uuuuUUCGGGCCUcCCCGGGUuuuCG- -5' |
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29806 | 5' | -53.2 | NC_006273.1 | + | 8377 | 0.68 | 0.952436 |
Target: 5'- uAGAGAcauGGUuuGGGGGGGaCCGGcGGCg -3' miRNA: 3'- -UUUUU---UCGggCCUCCCCgGGUUuUCG- -5' |
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29806 | 5' | -53.2 | NC_006273.1 | + | 73757 | 0.68 | 0.960095 |
Target: 5'- --cGAGGCCCGGcAGcGGCgCCGccAGCg -3' miRNA: 3'- uuuUUUCGGGCC-UCcCCG-GGUuuUCG- -5' |
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29806 | 5' | -53.2 | NC_006273.1 | + | 220883 | 0.68 | 0.963246 |
Target: 5'- ----cAGCCCuuGGGGGGaCCCAAGgacagacAGCg -3' miRNA: 3'- uuuuuUCGGGc-CUCCCC-GGGUUU-------UCG- -5' |
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29806 | 5' | -53.2 | NC_006273.1 | + | 94325 | 0.68 | 0.955996 |
Target: 5'- --cGAGGCCCGGcGccgguccguccgcGGGCCCGucccaccgcccuGGAGCa -3' miRNA: 3'- uuuUUUCGGGCCuC-------------CCCGGGU------------UUUCG- -5' |
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29806 | 5' | -53.2 | NC_006273.1 | + | 206323 | 0.69 | 0.923796 |
Target: 5'- ------aCCCGcGAccGGGGCCCAGAGGg -3' miRNA: 3'- uuuuuucGGGC-CU--CCCCGGGUUUUCg -5' |
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29806 | 5' | -53.2 | NC_006273.1 | + | 48684 | 0.69 | 0.917603 |
Target: 5'- aGAGGAAGCCCauguaGGucucGGGGUCCucgucguGAAAGCg -3' miRNA: 3'- -UUUUUUCGGG-----CCu---CCCCGGG-------UUUUCG- -5' |
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29806 | 5' | -53.2 | NC_006273.1 | + | 42030 | 0.69 | 0.929172 |
Target: 5'- cAAAGAGCCUccgGGAGGcGCCCGguuuacgugucgGGGGCg -3' miRNA: 3'- uUUUUUCGGG---CCUCCcCGGGU------------UUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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