miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 5' -53.2 NC_006273.1 + 140613 1.09 0.007137
Target:  5'- aAAAAAAGCCCGGAGGGGCCCAAAAGCc -3'
miRNA:   3'- -UUUUUUCGGGCCUCCCCGGGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 94516 0.77 0.56796
Target:  5'- ----cGGCCCGGGGGGaCCCGAGcgggGGCu -3'
miRNA:   3'- uuuuuUCGGGCCUCCCcGGGUUU----UCG- -5'
29806 5' -53.2 NC_006273.1 + 156208 0.77 0.578142
Target:  5'- gAGGAGAGCagcacguuaCCGGAGGGGCUCGAAacaucaucagggGGCu -3'
miRNA:   3'- -UUUUUUCG---------GGCCUCCCCGGGUUU------------UCG- -5'
29806 5' -53.2 NC_006273.1 + 140164 0.76 0.61919
Target:  5'- ----cAGCCUGGuGGGGUCC-GAGGCg -3'
miRNA:   3'- uuuuuUCGGGCCuCCCCGGGuUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 143949 0.73 0.750862
Target:  5'- ----uAGCgCCGGuGGGGCCCGc-GGCu -3'
miRNA:   3'- uuuuuUCG-GGCCuCCCCGGGUuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 113517 0.73 0.788723
Target:  5'- cGGGuuGCCCGG-GGGGCgCGcgGGCg -3'
miRNA:   3'- uUUUuuCGGGCCuCCCCGgGUuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 182781 0.73 0.788723
Target:  5'- cGAGAAGCCUGcGAGGcucucaaaaaGGCCCugcgGAGGCa -3'
miRNA:   3'- uUUUUUCGGGC-CUCC----------CCGGGu---UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 162978 0.72 0.797854
Target:  5'- cGAGAcGCgCGGAGGaGGCUCGAcGGCg -3'
miRNA:   3'- uUUUUuCGgGCCUCC-CCGGGUUuUCG- -5'
29806 5' -53.2 NC_006273.1 + 210778 0.72 0.824299
Target:  5'- cGAAGAGCgCGGAGGccacaGGCaCCAGGAGg -3'
miRNA:   3'- uUUUUUCGgGCCUCC-----CCG-GGUUUUCg -5'
29806 5' -53.2 NC_006273.1 + 33219 0.71 0.841058
Target:  5'- ---uGGGCCCGGuAGcgcaccgaGGGCCCcGGGGCg -3'
miRNA:   3'- uuuuUUCGGGCC-UC--------CCCGGGuUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 117230 0.71 0.841058
Target:  5'- gGAAGAGGCCgCaGAGGGGagagccgCCGAAAGUa -3'
miRNA:   3'- -UUUUUUCGG-GcCUCCCCg------GGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 148654 0.71 0.849151
Target:  5'- ----uGGCgCCGGAGGccGGCCUGGAGGUc -3'
miRNA:   3'- uuuuuUCG-GGCCUCC--CCGGGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 174707 0.71 0.857046
Target:  5'- uAAGAAGCCaagGGGGuGGGCCUAuAGAGUc -3'
miRNA:   3'- uUUUUUCGGg--CCUC-CCCGGGU-UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 189041 0.71 0.864734
Target:  5'- ----cAGCCgcgUGGuGGGGGCCCGGAccGGCg -3'
miRNA:   3'- uuuuuUCGG---GCC-UCCCCGGGUUU--UCG- -5'
29806 5' -53.2 NC_006273.1 + 94894 0.71 0.878751
Target:  5'- ----cGGuCCCGGAagguugggggcugGGGGCCCGgucaGGAGCu -3'
miRNA:   3'- uuuuuUC-GGGCCU-------------CCCCGGGU----UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 30172 0.7 0.8865
Target:  5'- ---cGAGCCCG--GGGGCCCGuc-GCa -3'
miRNA:   3'- uuuuUUCGGGCcuCCCCGGGUuuuCG- -5'
29806 5' -53.2 NC_006273.1 + 8144 0.7 0.8865
Target:  5'- gGAGAGGGCCuguCGGAGauGGCCguGAGGCa -3'
miRNA:   3'- -UUUUUUCGG---GCCUCc-CCGGguUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 145850 0.7 0.892636
Target:  5'- --cGAGGCCCuggguuucguuucGGAGGuGcGCCuCAAGAGCa -3'
miRNA:   3'- uuuUUUCGGG-------------CCUCC-C-CGG-GUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 190212 0.7 0.893306
Target:  5'- uGAAcAGCagCGGcuacAGGGGCCCGAGAuGCa -3'
miRNA:   3'- uUUUuUCGg-GCC----UCCCCGGGUUUU-CG- -5'
29806 5' -53.2 NC_006273.1 + 149579 0.7 0.89988
Target:  5'- ---cGGGCCCguGGAGGaGGCaaGAAAGCu -3'
miRNA:   3'- uuuuUUCGGG--CCUCC-CCGggUUUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.