miRNA display CGI


Results 21 - 40 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 5' -53.2 NC_006273.1 + 65672 0.67 0.977637
Target:  5'- -----cGCCUGGAcguugcacgcggcGGGuaCCGAAAGCg -3'
miRNA:   3'- uuuuuuCGGGCCU-------------CCCcgGGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 95505 0.67 0.975417
Target:  5'- gGGGAGGGuCCCGGcacGGGCCgAGGAGa -3'
miRNA:   3'- -UUUUUUC-GGGCCuc-CCCGGgUUUUCg -5'
29806 5' -53.2 NC_006273.1 + 234777 0.67 0.975417
Target:  5'- --cAGGGCCgCGGAcuGGGUCCccGAGCg -3'
miRNA:   3'- uuuUUUCGG-GCCUc-CCCGGGuuUUCG- -5'
29806 5' -53.2 NC_006273.1 + 122415 0.67 0.975417
Target:  5'- --cGGAGUCCGGcGGaucgcGGCCCucccAAAGCg -3'
miRNA:   3'- uuuUUUCGGGCCuCC-----CCGGGu---UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 39885 0.67 0.975417
Target:  5'- --cAGGGCCgCGGAcuGGGUCCccGAGCg -3'
miRNA:   3'- uuuUUUCGG-GCCUc-CCCGGGuuUUCG- -5'
29806 5' -53.2 NC_006273.1 + 73357 0.67 0.969915
Target:  5'- cAGAAGAGCCagcaccAGcGGGCCCAGAGucGCa -3'
miRNA:   3'- -UUUUUUCGGgcc---UC-CCCGGGUUUU--CG- -5'
29806 5' -53.2 NC_006273.1 + 115083 0.67 0.966857
Target:  5'- -----cGCCCGGuGaGGGaCCCucgucGGAAGCg -3'
miRNA:   3'- uuuuuuCGGGCCuC-CCC-GGG-----UUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 174960 0.68 0.963585
Target:  5'- ---cGAGCUCgaGGAGGGGCCgcugccCGGGGGUg -3'
miRNA:   3'- uuuuUUCGGG--CCUCCCCGG------GUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 181836 0.68 0.963585
Target:  5'- -uAGGAGCCUGGGGGuucuGCCCAAc--- -3'
miRNA:   3'- uuUUUUCGGGCCUCCc---CGGGUUuucg -5'
29806 5' -53.2 NC_006273.1 + 220883 0.68 0.963246
Target:  5'- ----cAGCCCuuGGGGGGaCCCAAGgacagacAGCg -3'
miRNA:   3'- uuuuuUCGGGc-CUCCCC-GGGUUU-------UCG- -5'
29806 5' -53.2 NC_006273.1 + 73757 0.68 0.960095
Target:  5'- --cGAGGCCCGGcAGcGGCgCCGccAGCg -3'
miRNA:   3'- uuuUUUCGGGCC-UCcCCG-GGUuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 94325 0.68 0.955996
Target:  5'- --cGAGGCCCGGcGccgguccguccgcGGGCCCGucccaccgcccuGGAGCa -3'
miRNA:   3'- uuuUUUCGGGCCuC-------------CCCGGGU------------UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 78676 0.68 0.955996
Target:  5'- gAGAAGGGgCCGGGGuccgcGGGCaccgccgCCGGAGGCg -3'
miRNA:   3'- -UUUUUUCgGGCCUC-----CCCG-------GGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 83411 0.68 0.952436
Target:  5'- ----cGGCCCGGcGGcGCCCG--AGCg -3'
miRNA:   3'- uuuuuUCGGGCCuCCcCGGGUuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 186643 0.68 0.952436
Target:  5'- ---cGAGCUCGGAcGGGCUCGuu-GCa -3'
miRNA:   3'- uuuuUUCGGGCCUcCCCGGGUuuuCG- -5'
29806 5' -53.2 NC_006273.1 + 8377 0.68 0.952436
Target:  5'- uAGAGAcauGGUuuGGGGGGGaCCGGcGGCg -3'
miRNA:   3'- -UUUUU---UCGggCCUCCCCgGGUUuUCG- -5'
29806 5' -53.2 NC_006273.1 + 140836 0.68 0.943848
Target:  5'- --cGGAGCCCGGGgaggagcgggguGGGGgUgGGAAGCc -3'
miRNA:   3'- uuuUUUCGGGCCU------------CCCCgGgUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 117814 0.69 0.939197
Target:  5'- --cGAAGCagaaGGAGGGGCCgCuacGGCg -3'
miRNA:   3'- uuuUUUCGgg--CCUCCCCGG-GuuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 8238 0.69 0.939197
Target:  5'- --uGGGGCCgGGAcGGGGUgggaCGAGAGCc -3'
miRNA:   3'- uuuUUUCGGgCCU-CCCCGg---GUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 89386 0.69 0.934305
Target:  5'- ----uAGCCaccaccuggaCGGGGGGGaCCGGGGGCg -3'
miRNA:   3'- uuuuuUCGG----------GCCUCCCCgGGUUUUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.