miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29806 5' -53.2 NC_006273.1 + 929 0.66 0.985921
Target:  5'- ----cGGUCgCGGccgcGGGGCCgGAGGGCc -3'
miRNA:   3'- uuuuuUCGG-GCCu---CCCCGGgUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 7734 0.66 0.98416
Target:  5'- gGAGAGAGaagaGGAgcGGGGCguCCGAAGGCg -3'
miRNA:   3'- -UUUUUUCggg-CCU--CCCCG--GGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 8144 0.7 0.8865
Target:  5'- gGAGAGGGCCuguCGGAGauGGCCguGAGGCa -3'
miRNA:   3'- -UUUUUUCGG---GCCUCc-CCGGguUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 8238 0.69 0.939197
Target:  5'- --uGGGGCCgGGAcGGGGUgggaCGAGAGCc -3'
miRNA:   3'- uuuUUUCGGgCCU-CCCCGg---GUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 8377 0.68 0.952436
Target:  5'- uAGAGAcauGGUuuGGGGGGGaCCGGcGGCg -3'
miRNA:   3'- -UUUUU---UCGggCCUCCCCgGGUUuUCG- -5'
29806 5' -53.2 NC_006273.1 + 19403 0.66 0.980145
Target:  5'- gAAAGAGGCCUGGuuacAGcGcGGCCgGcGAGCa -3'
miRNA:   3'- -UUUUUUCGGGCC----UC-C-CCGGgUuUUCG- -5'
29806 5' -53.2 NC_006273.1 + 30172 0.7 0.8865
Target:  5'- ---cGAGCCCG--GGGGCCCGuc-GCa -3'
miRNA:   3'- uuuuUUCGGGCcuCCCCGGGUuuuCG- -5'
29806 5' -53.2 NC_006273.1 + 33219 0.71 0.841058
Target:  5'- ---uGGGCCCGGuAGcgcaccgaGGGCCCcGGGGCg -3'
miRNA:   3'- uuuuUUCGGGCC-UC--------CCCGGGuUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 36757 0.66 0.985921
Target:  5'- ---cGGGCuCCGGcGGGuGGCCU--GAGCa -3'
miRNA:   3'- uuuuUUCG-GGCC-UCC-CCGGGuuUUCG- -5'
29806 5' -53.2 NC_006273.1 + 39885 0.67 0.975417
Target:  5'- --cAGGGCCgCGGAcuGGGUCCccGAGCg -3'
miRNA:   3'- uuuUUUCGG-GCCUc-CCCGGGuuUUCG- -5'
29806 5' -53.2 NC_006273.1 + 42030 0.69 0.929172
Target:  5'- cAAAGAGCCUccgGGAGGcGCCCGguuuacgugucgGGGGCg -3'
miRNA:   3'- uUUUUUCGGG---CCUCCcCGGGU------------UUUCG- -5'
29806 5' -53.2 NC_006273.1 + 46629 0.66 0.982238
Target:  5'- --uGAAGCCCGu---GGCCCAGGAGa -3'
miRNA:   3'- uuuUUUCGGGCcuccCCGGGUUUUCg -5'
29806 5' -53.2 NC_006273.1 + 48684 0.69 0.917603
Target:  5'- aGAGGAAGCCCauguaGGucucGGGGUCCucgucguGAAAGCg -3'
miRNA:   3'- -UUUUUUCGGG-----CCu---CCCCGGG-------UUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 65672 0.67 0.977637
Target:  5'- -----cGCCUGGAcguugcacgcggcGGGuaCCGAAAGCg -3'
miRNA:   3'- uuuuuuCGGGCCU-------------CCCcgGGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 73357 0.67 0.969915
Target:  5'- cAGAAGAGCCagcaccAGcGGGCCCAGAGucGCa -3'
miRNA:   3'- -UUUUUUCGGgcc---UC-CCCGGGUUUU--CG- -5'
29806 5' -53.2 NC_006273.1 + 73757 0.68 0.960095
Target:  5'- --cGAGGCCCGGcAGcGGCgCCGccAGCg -3'
miRNA:   3'- uuuUUUCGGGCC-UCcCCG-GGUuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 78676 0.68 0.955996
Target:  5'- gAGAAGGGgCCGGGGuccgcGGGCaccgccgCCGGAGGCg -3'
miRNA:   3'- -UUUUUUCgGGCCUC-----CCCG-------GGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 83411 0.68 0.952436
Target:  5'- ----cGGCCCGGcGGcGCCCG--AGCg -3'
miRNA:   3'- uuuuuUCGGGCCuCCcCGGGUuuUCG- -5'
29806 5' -53.2 NC_006273.1 + 89386 0.69 0.934305
Target:  5'- ----uAGCCaccaccuggaCGGGGGGGaCCGGGGGCg -3'
miRNA:   3'- uuuuuUCGG----------GCCUCCCCgGGUUUUCG- -5'
29806 5' -53.2 NC_006273.1 + 94325 0.68 0.955996
Target:  5'- --cGAGGCCCGGcGccgguccguccgcGGGCCCGucccaccgcccuGGAGCa -3'
miRNA:   3'- uuuUUUCGGGCCuC-------------CCCGGGU------------UUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.